Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_N11
         (495 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g27350.1 68414.m03331 expressed protein contains 1 transmembr...    55   3e-08
At1g27330.1 68414.m03329 expressed protein similar to EST gb|AA6...    55   3e-08
At4g24120.1 68417.m03462 transporter, putative similar to iron-p...    30   0.74 
At1g80810.1 68414.m09481 expressed protein similar to androgen-i...    29   2.3  
At3g11680.1 68416.m01432 expressed protein contains Pfam profile...    27   6.9  
At3g21270.1 68416.m02688 Dof-type zinc finger domain-containing ...    27   9.2  

>At1g27350.1 68414.m03331 expressed protein contains 1 transmembrane
           domain; similar to ribosome associated membrane protein
           RAMP4 GI:4585827 [Rattus norvegicus]; similar to ESTs
           gb|T20610 and gb|AA586199
          Length = 68

 Score = 54.8 bits (126), Expect = 3e-08
 Identities = 25/45 (55%), Positives = 33/45 (73%)
 Frame = +2

Query: 206 KNITLRGNVPKSTKEKEDQYPVAPWLLALFIFVVCGSAIFQIIQS 340
           KNI  RG VP++T +K   YPV P LL  F+FVV GS++FQII++
Sbjct: 17  KNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQIIRT 61


>At1g27330.1 68414.m03329 expressed protein similar to EST
           gb|AA650671 and gb|T20610
          Length = 68

 Score = 54.8 bits (126), Expect = 3e-08
 Identities = 25/45 (55%), Positives = 33/45 (73%)
 Frame = +2

Query: 206 KNITLRGNVPKSTKEKEDQYPVAPWLLALFIFVVCGSAIFQIIQS 340
           KNI  RG VP++T +K   YPV P LL  F+FVV GS++FQII++
Sbjct: 17  KNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQIIRT 61


>At4g24120.1 68417.m03462 transporter, putative similar to
           iron-phytosiderophore transporter protein yellow stripe
           1 [Zea mays] GI:10770865; contains Pfam profile PF03169:
           OPT oligopeptide transporter protein
          Length = 665

 Score = 30.3 bits (65), Expect = 0.74
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +2

Query: 212 ITLRGNVPKSTKEKEDQYPVAPWLLALFIFVVCGSAIFQII 334
           + L GN PKS KE     P   W+ A ++FVVC   +F +I
Sbjct: 141 VNLEGNSPKSVKE-----PGLGWMTA-YLFVVCFIGLFVLI 175


>At1g80810.1 68414.m09481 expressed protein similar to
           androgen-induced prostate proliferative shutoff
           associated protein (GI:4559410) [Homo sapiens]; similar
           to bimD (GI:168025) [Emericella nidulans]
          Length = 826

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 168 QNRGCALQMRSPAKISPCEEMSLNPQRKRKINTRSH 275
           ++RG +L M SP   S C+ +   P+    +NT+ H
Sbjct: 237 KSRGTSLDMYSPVVSSICQSVFNTPKVHSPVNTKEH 272


>At3g11680.1 68416.m01432 expressed protein contains Pfam profile
           PF01027: Uncharacterized protein family UPF0005
          Length = 488

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -1

Query: 300 KIKRASSQGATGY*SSFSFVDLGTFPRKVIFLLAISFAMRILCFGAIFLGYSIFV 136
           +IK+    GA  +  +FSFV +  +    I ++A      IL  G I +  SIF+
Sbjct: 149 RIKQRYDYGALIFILTFSFVAISGYRTDEILIMAYQRLSTILIGGTICILVSIFI 203


>At3g21270.1 68416.m02688 Dof-type zinc finger domain-containing
           protein (ADOF2) identical to Dof zinc finger protein
           ADOF2 GI:3608263 from [Arabidopsis thaliana]; identical
           to cDNA adof2 mRNA for Dof zinc finger protein
           GI:3608262; contains Pfam profile PF02701: Dof domain,
           zinc finger
          Length = 204

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 345 DSPKPDLKLSRLIYIFPI-KPAVQSM*FGASY 437
           +S KPDL  +R++Y FPI    V+ M  G S+
Sbjct: 116 NSQKPDLDPTRMLYGFPIGDQDVKGMEIGGSF 147


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,562,278
Number of Sequences: 28952
Number of extensions: 239222
Number of successful extensions: 642
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 868578304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)