Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_N10
(509 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p... 33 0.12
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 33 0.12
U40415-5|AAK39251.1| 655|Caenorhabditis elegans Hypothetical pr... 32 0.21
AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical... 29 2.0
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z81112-6|CAB03277.1| 673|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z77136-10|CAB00887.1| 673|Caenorhabditis elegans Hypothetical p... 27 6.0
>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
protein F41G3.12 protein.
Length = 1483
Score = 33.1 bits (72), Expect = 0.12
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 427 TPEYNPVCGSDHKTYKNQARL 489
T E+ VCGSD KTY N+ RL
Sbjct: 469 TDEFKEVCGSDGKTYSNECRL 489
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 403 KCAENCISTPEYNPVCGSDHKTYKNQARL 489
KC+E C + VCG+D KTY N+ L
Sbjct: 318 KCSEQCTMNSAH--VCGTDGKTYLNECFL 344
>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
protein) homologfamily member protein.
Length = 1473
Score = 33.1 bits (72), Expect = 0.12
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 427 TPEYNPVCGSDHKTYKNQARL 489
T E+ VCGSD KTY N+ RL
Sbjct: 477 TDEFKEVCGSDGKTYSNECRL 497
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 403 KCAENCISTPEYNPVCGSDHKTYKNQARL 489
KC+E C + VCG+D KTY N+ L
Sbjct: 326 KCSEQCTMNSAH--VCGTDGKTYLNECFL 352
>U40415-5|AAK39251.1| 655|Caenorhabditis elegans Hypothetical
protein K02G10.5 protein.
Length = 655
Score = 32.3 bits (70), Expect = 0.21
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 397 IEKCAENCISTPEYNPVCGSDHK-TYKNQARLFCA 498
+E C+ENC +NPVC D K T+ + CA
Sbjct: 442 LETCSENCHCDSFFNPVCSEDSKLTFLSPCHAGCA 476
>AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical
protein Y37A1B.11 protein.
Length = 691
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +2
Query: 332 KHRYQVKGKHQLLALVEHHDKQLRNARRIAFQHQNTTPCVVAIIK 466
+ R++ + +H AL +H ++L +R A + CV+++IK
Sbjct: 81 EQRHRRRRRHNETALEDHLSEKLSREKRAAAHIMRSRKCVISVIK 125
>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
protein F29G6.1 protein.
Length = 1170
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 415 NCISTPEYNPVCGSDHKTYKNQARLFCAQ 501
+C PVCG+D+ TY N L C Q
Sbjct: 18 DCDCPSVIRPVCGTDNVTYNNLCFLRCVQ 46
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 388 RQTIEKCAENCISTPEYNPVCGSDHKTYKN 477
R + + C NC +T E++PVC ++ Y+N
Sbjct: 109 RCSSKDCNHNCTNT-EFDPVCDTNGSVYRN 137
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 400 EKCAENCISTPEYNPVCGSDHKTYKNQARLFCAQNC 507
E C C T + +P+C SD TY+N + F Q C
Sbjct: 584 EACQMPC--TDDKHPICASDFSTYENLCQ-FRKQKC 616
>Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical
protein C34F6.1 protein.
Length = 1043
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 391 QTIEKCAENCISTPEYNPVCGSDHKTYKNQARLFCAQN 504
Q ++ C + T E NP S+ YKN +R+ C N
Sbjct: 284 QCVDACETETV-TDEANPCKFSNAAKYKNGSRIICGPN 320
>Z81112-6|CAB03277.1| 673|Caenorhabditis elegans Hypothetical
protein ZC376.3 protein.
Length = 673
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +1
Query: 412 ENCISTPEYNPVCGSD-HKTYKN 477
+ + T EY P C SD KTYKN
Sbjct: 73 DGILETKEYKPACMSDAKKTYKN 95
>Z77136-10|CAB00887.1| 673|Caenorhabditis elegans Hypothetical
protein ZC376.3 protein.
Length = 673
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +1
Query: 412 ENCISTPEYNPVCGSD-HKTYKN 477
+ + T EY P C SD KTYKN
Sbjct: 73 DGILETKEYKPACMSDAKKTYKN 95
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,682,830
Number of Sequences: 27780
Number of extensions: 275494
Number of successful extensions: 710
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -