Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_N10
         (509 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein con...    33   0.084
At4g22970.1 68417.m03315 peptidase C50 family protein contains P...    30   1.0  
At3g07050.1 68416.m00837 GTP-binding family protein contains Pfa...    29   2.4  
At3g10430.1 68416.m01251 F-box family protein contains F-box dom...    28   3.2  
At2g40460.1 68415.m04993 proton-dependent oligopeptide transport...    28   3.2  
At1g25540.1 68414.m03171 phytochrome and flowering time regulato...    28   3.2  
At2g27570.1 68415.m03340 sulfotransferase family protein similar...    27   5.5  
At5g60970.1 68418.m07648 TCP family transcription factor, putati...    27   7.3  
At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein si...    27   7.3  
At2g44460.1 68415.m05528 glycosyl hydrolase family 1 protein con...    27   7.3  

>At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to Cyanogenic Beta-Glucosidase
           (GI:1311386)(pdb:1CBG) [Trifolium Repens]; identical
           beta-glucosidase GI:10834547
          Length = 577

 Score = 33.5 bits (73), Expect = 0.084
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = +1

Query: 142 IRYKRQIENNANLFIDKNGWNKSQDGNRPEWIPIQNGYRIQY 267
           + Y ++  NN  ++I +NG N + DG +P    +++ +RI+Y
Sbjct: 394 LNYIKERYNNMPVYIKENGINDNDDGTKPREEIVKDTFRIEY 435


>At4g22970.1 68417.m03315 peptidase C50 family protein contains Pfam
            PF03568: Peptidase family C50
          Length = 1773

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 23/76 (30%), Positives = 35/76 (46%)
 Frame = +2

Query: 251  VTEFNTLWTTIIIL*PSFFLIKCSSQTKHRYQVKGKHQLLALVEHHDKQLRNARRIAFQH 430
            V++F   +   +I   +  L  CSS    +  +  K Q L L E   K+L+NA+ I   +
Sbjct: 911  VSQFGVKFAGFLIPFVNKLLDLCSSSLISQGNLYHKKQCLDLAE---KELQNAKEILIAN 967

Query: 431  QNTTPCVVAIIKLTKT 478
            Q    CV   +KL  T
Sbjct: 968  QRDFSCVKCKLKLEVT 983


>At3g07050.1 68416.m00837 GTP-binding family protein contains Pfam
           domain, PF01926: GTPase of unknown function
          Length = 582

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
 Frame = +2

Query: 308 LIKCSSQTKH-RYQVKGKHQLLALV-EHHDKQLRNARRIAFQHQ 433
           ++K S ++K  R  +K KH++L  V EHH K+ ++A+++    +
Sbjct: 1   MVKRSKKSKSKRVTLKQKHKVLKKVKEHHKKKAKDAKKLGLHRK 44


>At3g10430.1 68416.m01251 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 370

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 446 TGLYSGVEMQFSAHFSIVCRDVPPVLGVDVCP*PG 342
           T   S   + FS +FS+   D+P    +D+ P PG
Sbjct: 266 TNKLSDEVVSFSRYFSVTLPDIPLFRSIDILPLPG 300


>At2g40460.1 68415.m04993 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 583

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +2

Query: 335 HRYQVKGKHQLLALVEHHDKQLRNARRIAFQHQNTTPCVVAIIKLTK 475
           H Y+  GKHQ+     HH    R   + A +  +  PC V  +++ K
Sbjct: 277 HYYKSNGKHQV-----HHTPVFRFLDKAAIKTSSRVPCTVTKVEVAK 318


>At1g25540.1 68414.m03171 phytochrome and flowering time regulatory
           protein (PFT1) PMID: 12815435
          Length = 836

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +2

Query: 326 QTKHRYQVKGKHQLLALVEHHDKQLRNARRIAFQHQNT 439
           Q +H+ Q + +HQL  L +HH +Q +  ++   QHQ T
Sbjct: 721 QQQHQQQQQQQHQLSQL-QHHQQQQQQQQQQQQQHQLT 757


>At2g27570.1 68415.m03340 sulfotransferase family protein similar to
           steroid sulfotransferase from [Brassica napus]
           GI:3420008, GI:3420006; contains Pfam profile PF00685:
           Sulfotransferase domain
          Length = 273

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 236 IHSGRFPS*DLFHPFLSINKFALFS 162
           +H  + PS D  HP LS N   LFS
Sbjct: 88  VHRSKHPSHDHHHPLLSNNPHVLFS 112


>At5g60970.1 68418.m07648 TCP family transcription factor, putative
           putative basic helix-loop-helix DNA binding protein
           TCP2, Arabidopsis thaliana, EMBL:AF072691
          Length = 360

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +1

Query: 184 IDKNGWNKSQDGNRPEWIPIQNGYRIQYPLDNNYN 288
           +DK  W K+ + +  +       ++ Q+PL N YN
Sbjct: 192 LDKGKWIKNDENSNQDHQGFNTNHQQQFPLTNPYN 226


>At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein similar
            to alpha-mannosidase II SP:P27046 from [Mus musculus]
          Length = 1173

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 142  IRYKRQIENNANLFIDKNGWNKSQDGNRPEWIPIQNGYRIQYPL 273
            +RYK  ++N    + D NG+  S+     + IP+Q  Y   YP+
Sbjct: 883  VRYKTDVDNKKVFYSDLNGFQMSRRETYDK-IPLQGNY---YPM 922


>At2g44460.1 68415.m05528 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to beta-glucosidase 1 (GI:12043529) [Arabidopsis
           thaliana]
          Length = 582

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +1

Query: 142 IRYKRQIENNANLFIDKNGWNKSQDGNRPEWIPIQNGYRIQYPLDN 279
           + Y +   NN  ++I +NG N   DG +     + + +RI Y  D+
Sbjct: 396 LNYIKDKYNNPIVYIKENGINDYDDGTKSREEILNDTFRISYHEDH 441


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,740,307
Number of Sequences: 28952
Number of extensions: 244740
Number of successful extensions: 566
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)