Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_N09
(475 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916... 28 3.3
06_01_0469 + 3322886-3323564,3324033-3324953,3325025-3325155,332... 28 4.4
02_05_0008 + 24934917-24935229,24936387-24936608,24936876-249375... 28 4.4
10_08_0355 - 17131178-17131268,17131376-17131429,17131521-171316... 27 5.8
07_03_1700 - 28810239-28810870,28811304-28812594 27 7.7
04_04_0451 - 25323178-25323241,25323614-25323741,25324533-253246... 27 7.7
02_04_0622 - 24508508-24508666,24509533-24509634,24510108-245101... 27 7.7
>01_03_0256 +
14288885-14288936,14289362-14291335,14291648-14291673,
14291855-14292025,14292560-14292647,14292711-14292802,
14292920-14293384,14293860-14294633,14294890-14295087,
14296940-14297374,14297455-14297688,14298042-14298323
Length = 1596
Score = 28.3 bits (60), Expect = 3.3
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 3/116 (2%)
Frame = +2
Query: 50 EDIGFNSYYYYFHSHLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRYYFERLTNGLGSIP 229
+ I F+SY + +P WW +E N EIY + Y++RL G+
Sbjct: 281 QSIPFSSYIWR-RGTIPIWWGAE-IKNAVSVEAEIYVADDPFNGSLQYYQRLGRRYGNKS 338
Query: 230 -EFSWYSPIKTGYYPLMTSYYFPFAQ-RPDNYNLHSVK-NYEAIRFLDIFEKTFVQ 388
E + S K G P++ + +P+ + S K + E +R KT++Q
Sbjct: 339 LEVNATSQKKPGVVPIVCVNLLRYGDGKPETVLVDSFKSSLEYLRSTKKLGKTWIQ 394
>06_01_0469 +
3322886-3323564,3324033-3324953,3325025-3325155,
3325237-3325317,3328173-3328820
Length = 819
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -3
Query: 356 TVLLRSSLRCVDCSCPAFERMG 291
TVLL +S + C C FERMG
Sbjct: 388 TVLLDTSTMEISCGCRKFERMG 409
>02_05_0008 +
24934917-24935229,24936387-24936608,24936876-24937591,
24937646-24937728,24938448-24938514,24938833-24939228,
24939276-24939318,24939380-24939474,24940287-24940314,
24940636-24940754
Length = 693
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/38 (31%), Positives = 16/38 (42%)
Frame = +2
Query: 26 EQRLTYLTEDIGFNSYYYYFHSHLPFWWSSERYGNLKH 139
E+ + + IG Y Y + PF GNLKH
Sbjct: 281 EESIHFFMRSIGLREYSRYLCFNFPFTHEKSLLGNLKH 318
>10_08_0355 -
17131178-17131268,17131376-17131429,17131521-17131663,
17131812-17132096,17132168-17132301,17132383-17132556,
17132639-17132707,17132814-17132878,17133441-17133589,
17133747-17133989,17134119-17134255,17134340-17134561,
17134661-17134827,17136680-17136819
Length = 690
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +2
Query: 314 NYNLHSV---KNYEAIRFLDIFEKTFVQSLQK 400
NYN+ V KN+ A+R DIF KT + +K
Sbjct: 521 NYNIAIVSLKKNFNAVRLEDIFSKTVQEPSEK 552
>07_03_1700 - 28810239-28810870,28811304-28812594
Length = 640
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 310 GQLQSTQRKELRSNTVLGHF*KDFRTVPTERQI 408
G+L S Q LRSN + G D T+P+ R I
Sbjct: 94 GKLDSLQVLSLRSNRLAGSLPSDVTTLPSLRSI 126
>04_04_0451 - 25323178-25323241,25323614-25323741,25324533-25324634,
25325314-25325382,25325489-25325557,25325646-25325720,
25325805-25325909,25326394-25326492,25326626-25328344,
25328629-25328931,25329031-25329129,25329733-25329850,
25329933-25330018,25330091-25330159,25330232-25330306,
25330675-25330772,25331271-25331432,25332391-25332556,
25332902-25332970,25333064-25333126,25333221-25333376,
25334027-25334365
Length = 1410
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 201 VLQTAWVPYLNSLGTRLLRLVTI 269
+L A+VPYL L + LRLVTI
Sbjct: 1359 MLGKAFVPYLEGLNSTQLRLVTI 1381
>02_04_0622 - 24508508-24508666,24509533-24509634,24510108-24510176,
24510294-24510362,24510428-24510502,24510584-24510688,
24511309-24511407,24511521-24513230,24513489-24513788,
24514748-24514846,24514962-24515079,24515166-24515251,
24515334-24515402,24515746-24515843,24516373-24516534,
24516779-24516787,24516970-24516991,24517620-24517712,
24517872-24517940,24518720-24518782,24518882-24519037,
24520895-24521230
Length = 1355
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 201 VLQTAWVPYLNSLGTRLLRLVTI 269
+L A+VPYL L + LRLVTI
Sbjct: 1315 MLGKAFVPYLEGLNSTQLRLVTI 1337
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,562,146
Number of Sequences: 37544
Number of extensions: 215114
Number of successful extensions: 543
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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