Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_N09
         (475 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.85 
SB_19503| Best HMM Match : Kinesin (HMM E-Value=9.5e-14)               29   2.0  
SB_22838| Best HMM Match : Arrestin_N (HMM E-Value=1.1e-30)            27   6.0  
SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +2

Query: 257  TGYYPLMT-SYYFPF--AQRPDNYNLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKK 427
            T Y P  T S Y      Q+P+N++LH     +A+        T    L  GKF+S G+ 
Sbjct: 4715 TSYQPAATDSLYISSQSTQKPNNHHLHRTCKADALEV----NVTLRGGLHAGKFKSVGRT 4770

Query: 428  IDFHD 442
             D H+
Sbjct: 4771 RDVHE 4775


>SB_19503| Best HMM Match : Kinesin (HMM E-Value=9.5e-14)
          Length = 869

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +3

Query: 132 LSIAVAKYITISTNN*QHVITS-SVLQTAWVPYLNSLGTRLLR 257
           + +A AKYI +S +  + VI + S    + +PY NS+ T +LR
Sbjct: 165 IQLAEAKYINVSLHFLEQVIVALSEKSRSHIPYRNSMMTSVLR 207


>SB_22838| Best HMM Match : Arrestin_N (HMM E-Value=1.1e-30)
          Length = 173

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/56 (23%), Positives = 20/56 (35%)
 Frame = +2

Query: 35  LTYLTEDIGFNSYYYYFHSHLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRYYFER 202
           + Y  E + F S +  FH      W         H+  E+Y+N    L    +  R
Sbjct: 29  VVYSKESLKFRSVHVEFHGEARTNWDEMENYTTTHKNEEVYFNKKTSLLANVHLYR 84


>SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +2

Query: 71  YYYYFHSHLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRYYF 196
           YYYY++ +  +++    Y    H     YY +Y      YY+
Sbjct: 109 YYYYYYYYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYY 150


>SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 352

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/52 (25%), Positives = 19/52 (36%)
 Frame = +2

Query: 47  TEDIGFNSYYYYFHSHLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRYYFER 202
           TE + F S +  FH      W         H+  E+Y+N    L    +  R
Sbjct: 48  TESLKFRSVHVEFHGEARTNWDEIENYTTTHKNEEVYFNKKTSLLANVHLYR 99


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,939,085
Number of Sequences: 59808
Number of extensions: 269870
Number of successful extensions: 716
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)