Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_N09
         (475 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81579-9|CAN99688.1|  225|Caenorhabditis elegans Hypothetical pr...    31   0.42 
AF273836-1|AAG15184.1|  362|Caenorhabditis elegans nuclear recep...    29   1.7  
AC024776-15|AAK68482.2|  354|Caenorhabditis elegans Nuclear horm...    29   1.7  
AF047658-1|AAC04418.2|  348|Caenorhabditis elegans Hypothetical ...    27   5.2  
AC006665-2|AAF39904.1|  341|Caenorhabditis elegans Hypothetical ...    27   5.2  
Z93380-3|CAB07600.1|  339|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z82278-9|CAE17877.1|  323|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z82070-8|CAE17980.1|  323|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z69634-1|CAA93450.2|  271|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>Z81579-9|CAN99688.1|  225|Caenorhabditis elegans Hypothetical
           protein R13H4.2a protein.
          Length = 225

 Score = 31.1 bits (67), Expect = 0.42
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +2

Query: 44  LTEDIGFNSYYYYFHSHLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRY 190
           L +D  ++ YYY+   +   ++ S RY    +     Y+N Y    TRY
Sbjct: 71  LYDDYWYDKYYYFSPLYRSTYYPSRRYSYSDYLPNPYYWNNYGSYWTRY 119


>AF273836-1|AAG15184.1|  362|Caenorhabditis elegans nuclear receptor
           NHR-92 protein.
          Length = 362

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 440 RGNQFSCHTIRICLSVGTVRKSFQKCPRT 354
           RG+++ C  +  CL V T+R   +KC  T
Sbjct: 43  RGHEYRCKQMENCLIVSTIRNMCKKCRYT 71


>AC024776-15|AAK68482.2|  354|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 92 protein.
          Length = 354

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 440 RGNQFSCHTIRICLSVGTVRKSFQKCPRT 354
           RG+++ C  +  CL V T+R   +KC  T
Sbjct: 35  RGHEYRCKQMENCLIVSTIRNMCKKCRYT 63


>AF047658-1|AAC04418.2|  348|Caenorhabditis elegans Hypothetical
           protein K03H6.2 protein.
          Length = 348

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 92  HLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRYY 193
           HLPF +    +  + H R EI+YN    + + Y+
Sbjct: 264 HLPFQYELVDHDKMYHHRTEIWYNNDMSIGSSYH 297


>AC006665-2|AAF39904.1|  341|Caenorhabditis elegans Hypothetical
           protein H27M09.5 protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +3

Query: 387 SPYRKANSNRMARKLISTIKRPLTLSE 467
           SP  K ++    +KLISTIK P TLS+
Sbjct: 269 SPGDKKSAKISTKKLISTIKPPKTLSK 295


>Z93380-3|CAB07600.1|  339|Caenorhabditis elegans Hypothetical
           protein F28C12.4 protein.
          Length = 339

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
 Frame = +2

Query: 5   TFLYNNEEQRLTYLTEDIGFNSYYY----YFHSHLPFWWSSERYGNLKHRRGEIYYNFYQ 172
           +F+Y++E  RL +   D     Y+Y    YF ++  F  + +R   + +   + Y ++  
Sbjct: 92  SFVYSSEPCRLPFHFTDCEVELYFYYLTNYFSTYSVFSLTFDRL--ISYFFPKCYISYPY 149

Query: 173 QLTTRYYFERLTNGLGSIPEFSWYSPIKTGYYPL 274
           Q++      +L   LG+   F  Y   K GY P+
Sbjct: 150 QVSISLLIIQLVFTLGTY-YFGLYGVPKLGYVPI 182


>Z82278-9|CAE17877.1|  323|Caenorhabditis elegans Hypothetical
           protein W04E12.9 protein.
          Length = 323

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/59 (22%), Positives = 27/59 (45%)
 Frame = +2

Query: 263 YYPLMTSYYFPFAQRPDNYNLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKKIDFH 439
           Y P + S +  F   P ++NL+   +     F+     T + + +K K E++  ++  H
Sbjct: 3   YLPSLPSLFLYFYDHPSSHNLYIYLHL----FVQSNTTTIISNFRKQKHENHSSEVSMH 57


>Z82070-8|CAE17980.1|  323|Caenorhabditis elegans Hypothetical
           protein W04E12.9 protein.
          Length = 323

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/59 (22%), Positives = 27/59 (45%)
 Frame = +2

Query: 263 YYPLMTSYYFPFAQRPDNYNLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKKIDFH 439
           Y P + S +  F   P ++NL+   +     F+     T + + +K K E++  ++  H
Sbjct: 3   YLPSLPSLFLYFYDHPSSHNLYIYLHL----FVQSNTTTIISNFRKQKHENHSSEVSMH 57


>Z69634-1|CAA93450.2|  271|Caenorhabditis elegans Hypothetical
           protein B0001.1 protein.
          Length = 271

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +2

Query: 227 PEFSWYSPIKTGYYPLMTSYYFPFAQRPDNYNLHSVKNYEAI 352
           P++S + P  +  Y L  S Y     RP  Y+  + +  E++
Sbjct: 56  PQYSHFQPAGSKPYTLFKSVYTNSTNRPQEYSFKTERTTESL 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,365,136
Number of Sequences: 27780
Number of extensions: 209135
Number of successful extensions: 443
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)