Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_N08
         (244 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase Idi1|S...    25   1.4  
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    25   1.9  
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    25   1.9  
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy...    24   3.2  
SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po...    24   3.2  
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    23   4.3  
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe...    23   5.6  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    23   7.5  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    23   7.5  

>SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase
           Idi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 227

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 14  SKEKDTFSAIWPTSCCA 64
           ++EK TF ++W  +CC+
Sbjct: 72  AEEKITFPSLWTNTCCS 88


>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 605

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 91  PACTRAGSSSVGEVSKIGDREWVGYGLNGQ 180
           PA  R  SS +  +  +GDR+ V  G NG+
Sbjct: 388 PAAARKRSSLLTAIRSLGDRKIVLIGDNGE 417


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 24  KTHFQQYGQLLAAPCTVRCSPRTCLH 101
           +T  + +G+LLA+ C  +    +CLH
Sbjct: 402 ETCSEWWGELLASTCNTKLDNLSCLH 427


>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 354

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 18  KKKTHFQQYGQLLAAPCTVR 77
           K + HF+QYG L +  C+ R
Sbjct: 227 KIRKHFEQYGPLKSVVCSHR 246


>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 230

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 91  VRGLHLTVHGAARSWPYC 38
           ++ LHL+      SWP+C
Sbjct: 136 IKQLHLSKPALGNSWPFC 153


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 14  SKEKDTFSAIWPTSCCAVHC 73
           SKEK   SA+W T C  V+C
Sbjct: 201 SKEK---SALWATKCGHVYC 217


>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 504

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 104 GPDHLQLEKSLKLVTVN 154
           GPDH+Q     K VT+N
Sbjct: 3   GPDHVQCPVCAKTVTMN 19


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 15  RKKKTHFQQYGQLLAAPC 68
           R  KT+ +Q+G+LLA  C
Sbjct: 650 RLTKTNVKQFGRLLAKVC 667


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -1

Query: 208 ESQPCQRS*VARLSHSPPIHGHQF*RLLQLKMIRPW 101
           +SQ C+      L HS  +H   +  LL+ +   PW
Sbjct: 442 QSQNCEYVLYGVLVHSGDLHNGHYYALLKTEKDGPW 477


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,017,554
Number of Sequences: 5004
Number of extensions: 16933
Number of successful extensions: 33
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 43412082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)