Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_N08
(244 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1271 + 35890317-35890762,35891113-35891173,35891669-358918... 29 0.40
06_03_0232 - 18507872-18508792 29 0.69
02_01_0168 + 1162447-1162866,1162940-1163317,1163606-1163829,116... 28 0.91
04_04_1701 + 35470535-35471170,35471254-35471403,35471745-354720... 27 2.1
03_06_0213 - 32406047-32406742 26 4.9
10_01_0195 + 2137098-2137498,2137687-2137987 25 6.4
08_02_1614 - 28243532-28244589,28245149-28245383,28245524-282457... 25 6.4
08_01_1026 - 10366534-10368021,10368505-10368525 25 6.4
05_04_0028 + 17302359-17302445,17303887-17303952,17305415-173054... 25 6.4
10_08_0516 + 18478743-18478830,18478940-18479319,18479406-184796... 25 8.5
>01_06_1271 +
35890317-35890762,35891113-35891173,35891669-35891813,
35891903-35891982,35892465-35892548,35892644-35892718,
35893150-35893242,35893315-35893503
Length = 390
Score = 29.5 bits (63), Expect = 0.40
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 91 PACTRAGSSSVGEVSKIGDREWVGYGLNGQ 180
PA A +S + S+ G R WVGY L Q
Sbjct: 13 PAAAHAPASKASKASRPGPRSWVGYLLREQ 42
>06_03_0232 - 18507872-18508792
Length = 306
Score = 28.7 bits (61), Expect = 0.69
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = -3
Query: 176 PFKP*PTHSRSPILETSPTEDDPALVQAGTRTASNSARRSKKLAILLKMCLFLSK 12
PF+P S SP+L S L + + ++S+S+ K L + MC +K
Sbjct: 140 PFRPRAPPSSSPVLPRSVPSTSAGLSSSASPSSSSSSPIKKALQAIFCMCAKTAK 194
>02_01_0168 +
1162447-1162866,1162940-1163317,1163606-1163829,
1163929-1163992,1164521-1164717,1164849-1165062
Length = 498
Score = 28.3 bits (60), Expect = 0.91
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 133 RLLQLKMIRPWCRQVRGLHLTVHGAARSWPYC*KCVFFFRK 11
RLLQL I ++RG++ T G S+ Y C+ F ++
Sbjct: 312 RLLQLAFIVKHWAKLRGVNETYRGTLSSYAYVLMCISFLQQ 352
>04_04_1701 +
35470535-35471170,35471254-35471403,35471745-35472015,
35472152-35472262,35472476-35472650,35472748-35473020,
35473251-35473494,35473623-35473708,35473752-35473968
Length = 720
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -3
Query: 158 THSRSPILETSPTEDDPALVQAGTRT 81
+HS SP LET+ TE DP Q+ + T
Sbjct: 101 SHSHSPSLETA-TEADPQAAQSNSNT 125
>03_06_0213 - 32406047-32406742
Length = 231
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 133 SKIGDREWVGYGLNGQPNYVDRADFPMPA 219
+++GDRE+ G G G+ +VD A P A
Sbjct: 146 AELGDREFFGGGGGGRLGFVDVALVPFTA 174
>10_01_0195 + 2137098-2137498,2137687-2137987
Length = 233
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 234 RTESNSRHGKVSPVNVVRLPV*AIAHPFTVTNF 136
RTE SR G V P+++ LP+ ++ F V F
Sbjct: 186 RTERISRFGTVRPIHLNSLPLEEYSYLFKVLAF 218
>08_02_1614 -
28243532-28244589,28245149-28245383,28245524-28245734,
28245834-28245907,28246465-28246665
Length = 592
Score = 25.4 bits (53), Expect = 6.4
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -3
Query: 215 GMGKSALST*LGCPFKP*PTHSRSPILETSPTEDDPALVQA 93
G GKS L T +GC P P H L + D + +QA
Sbjct: 101 GCGKSTLLTAIGCRELPIPEHMDIYHLSSEIEASDMSALQA 141
>08_01_1026 - 10366534-10368021,10368505-10368525
Length = 502
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3
Query: 45 GQLLAAPCTVRCSPRT 92
G LL PC VRCS +T
Sbjct: 466 GALLCEPCGVRCSGKT 481
>05_04_0028 +
17302359-17302445,17303887-17303952,17305415-17305489,
17305638-17305737,17305819-17305865,17305937-17305994,
17306161-17306210,17306417-17306473,17306561-17306703,
17306793-17306834,17307083-17307124,17308239-17308272,
17308342-17308443,17310373-17310652,17311202-17311332,
17311676-17311773,17312525-17312717
Length = 534
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -3
Query: 158 THSRSPILETSPTED-DPALVQAGTRTASNSARRSKKLA 45
+ SRSP+ E SP+ PA ++AS S +S+ L+
Sbjct: 247 SQSRSPVKERSPSRSPPPATSPPREKSASKSPVKSRSLS 285
>10_08_0516 +
18478743-18478830,18478940-18479319,18479406-18479641,
18480280-18480538
Length = 320
Score = 25.0 bits (52), Expect = 8.5
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +1
Query: 151 EWVGYGLNGQP 183
+W GYGL+GQP
Sbjct: 66 DWRGYGLSGQP 76
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,186,273
Number of Sequences: 37544
Number of extensions: 128665
Number of successful extensions: 315
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 14,793,348
effective HSP length: 59
effective length of database: 12,578,252
effective search space used: 264143292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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