Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_N08
         (244 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82077-6|CAB63334.1|  175|Caenorhabditis elegans Hypothetical pr...    41   1e-04
AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal ne...    27   1.8  
Z92797-1|CAB07234.1|  552|Caenorhabditis elegans Hypothetical pr...    27   2.3  
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ...    26   3.1  
AL117205-5|CAB55163.1|  456|Caenorhabditis elegans Hypothetical ...    26   4.1  
AC024201-4|AAK93867.2|  534|Caenorhabditis elegans Hypothetical ...    26   4.1  
Z81564-3|CAB04577.1|  536|Caenorhabditis elegans Hypothetical pr...    25   7.1  
L15314-5|AAK18968.1|  236|Caenorhabditis elegans Isopentenyl dip...    25   7.1  
AY597336-1|AAT08468.1|  236|Caenorhabditis elegans isopentenyl-d...    25   7.1  
AL117205-4|CAB55162.1|  441|Caenorhabditis elegans Hypothetical ...    25   7.1  
U88178-1|AAC24412.1|  296|Caenorhabditis elegans Hypothetical pr...    25   9.4  
AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical...    25   9.4  

>Z82077-6|CAB63334.1|  175|Caenorhabditis elegans Hypothetical
           protein W09C5.8 protein.
          Length = 175

 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 19/34 (55%), Positives = 21/34 (61%)
 Frame = +1

Query: 136 KIGDREWVGYGLNGQPNYVDRADFPMPAIRFRAD 237
           K   RE VGYG NG   Y DR D+  PAIRFR +
Sbjct: 29  KAAGRELVGYGANGDNIYQDRLDYWYPAIRFRKE 62


>AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal
            neurexin-like protein 1 protein.
          Length = 1655

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 33   FQQYGQ-LLAAPCTVRCSPRTCLHQGRIIFSW 125
            ++ YG  L+   C V CS  TCL+ G    +W
Sbjct: 1145 YEAYGPALVKVGCEVGCSSITCLNGGHCSVAW 1176


>Z92797-1|CAB07234.1|  552|Caenorhabditis elegans Hypothetical
           protein H25P06.1 protein.
          Length = 552

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 133 SKIGDREWVGYGLNGQPNYV 192
           S I D EW G+G NG+ +Y+
Sbjct: 283 SMIIDTEWGGFGDNGEADYI 302


>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
           protein H11E01.3 protein.
          Length = 1464

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 242 GVSARNLIAGMGKSALST*LGCPFKP*PTHSRSPILETSPTED 114
           G +A    A +G +A++       +P P+  R+P+LET  T D
Sbjct: 305 GAAAAATAAAIGTAAINMDTLIDKEPEPSPPRTPVLETQKTFD 347


>AL117205-5|CAB55163.1|  456|Caenorhabditis elegans Hypothetical
           protein Y116A8A.6 protein.
          Length = 456

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 170 KP*PTHSRSPILETSPTEDDPALVQAGTRTASNSA 66
           KP  T   SP+  +S    +P L     RTAS+SA
Sbjct: 327 KPATTTEPSPLQASSKPATEPLLQPESARTASSSA 361


>AC024201-4|AAK93867.2|  534|Caenorhabditis elegans Hypothetical
           protein Y71F9B.6 protein.
          Length = 534

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 158 THSRSPILETSPTEDDPALVQAGTRTASNSARR 60
           T+SRSPILE     +D  L++  + + S S+ +
Sbjct: 117 TNSRSPILEEGVGREDSGLIEFRSESPSCSSNQ 149


>Z81564-3|CAB04577.1|  536|Caenorhabditis elegans Hypothetical
           protein K05C4.3 protein.
          Length = 536

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 6   LTFRKKKTHFQQYGQLLAAPCTVRCSPRTCLH 101
           LT+   +T       L  + CT+  +P TCLH
Sbjct: 305 LTYTLNRTDTDITRGLKESICTIMSNPETCLH 336


>L15314-5|AAK18968.1|  236|Caenorhabditis elegans Isopentenyl
           diphosphate isomeraseprotein 1 protein.
          Length = 236

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = +2

Query: 14  SKEKDTFSAIWPTSCCAVHC*MQSAYLPAPGPDHLQLEK 130
           S EK TF  +W  +CC+     Q      PG     + K
Sbjct: 82  SAEKITFPNLWTNTCCSHPLHTQQEMDGVPGAKRAAIRK 120


>AY597336-1|AAT08468.1|  236|Caenorhabditis elegans
           isopentenyl-diphosphate isomerase protein.
          Length = 236

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = +2

Query: 14  SKEKDTFSAIWPTSCCAVHC*MQSAYLPAPGPDHLQLEK 130
           S EK TF  +W  +CC+     Q      PG     + K
Sbjct: 82  SAEKITFPNLWTNTCCSHPLHTQQEMDGVPGAKRAAIRK 120


>AL117205-4|CAB55162.1|  441|Caenorhabditis elegans Hypothetical
           protein Y116A8A.4 protein.
          Length = 441

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 170 KP*PTHSRSPILETSPTEDDPALVQAGTRTASNSA 66
           KP  T   SP+  +S    +P L    TR AS+SA
Sbjct: 327 KPSTTTEPSPLQASSKPATEPLLRPESTRRASSSA 361


>U88178-1|AAC24412.1|  296|Caenorhabditis elegans Hypothetical
           protein W09C3.4 protein.
          Length = 296

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -3

Query: 122 TEDDPALVQAGTRTASNSARRSKKLAI 42
           T   P L Q   +TA NS   SKKLAI
Sbjct: 35  TSMTPGLPQTVRQTAINSLLSSKKLAI 61


>AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical
            protein Y59A8B.1a protein.
          Length = 1641

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 122  TEDDPALVQAGTRTASNSARRSK 54
            TEDDP      T T S+S+  SK
Sbjct: 1460 TEDDPTTTTTTTTTTSSSSSSSK 1482


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,809,400
Number of Sequences: 27780
Number of extensions: 100107
Number of successful extensions: 228
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 12,740,198
effective HSP length: 60
effective length of database: 11,073,398
effective search space used: 221467960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)