Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_N07
(438 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 231 3e-62
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 231 4e-62
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 231 4e-62
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 124 8e-30
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 123 1e-29
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 76 3e-15
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 52 3e-08
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 42 5e-05
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 40 1e-04
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 40 1e-04
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 40 2e-04
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 31 0.006
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 30 0.14
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 29 0.31
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 29 0.31
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 27 0.96
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 27 1.3
SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces ... 27 1.7
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 26 2.2
SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subun... 26 2.9
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 26 2.9
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 25 5.1
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 5.1
SPAC17G8.04c |arc15|arc5, arc5|ARP2/3 actin-organizing complex s... 25 6.7
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 24 8.9
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 24 8.9
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc... 24 8.9
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 231 bits (566), Expect = 3e-62
Identities = 107/114 (93%), Positives = 110/114 (96%)
Frame = +3
Query: 96 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 275
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 276 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVL 437
DKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVL
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVL 114
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 231 bits (565), Expect = 4e-62
Identities = 106/114 (92%), Positives = 110/114 (96%)
Frame = +3
Query: 96 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 275
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 276 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVL 437
DKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+L
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAIL 114
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 231 bits (565), Expect = 4e-62
Identities = 106/114 (92%), Positives = 110/114 (96%)
Frame = +3
Query: 96 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 275
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 276 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVL 437
DKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+L
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAIL 114
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 124 bits (298), Expect = 8e-30
Identities = 57/107 (53%), Positives = 74/107 (69%)
Frame = +3
Query: 117 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 296
+++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD + ER
Sbjct: 178 VHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEER 237
Query: 297 ERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVL 437
RG+T+D+A FE+ K I DAPGHRDFI MI G S AD AVL
Sbjct: 238 ARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVL 284
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 123 bits (297), Expect = 1e-29
Identities = 55/110 (50%), Positives = 77/110 (70%)
Frame = +3
Query: 108 KVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 287
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 288 AERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVL 437
ERE+G T+++ FET +++DAPGH+ ++ NMI G SQAD VL
Sbjct: 296 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVL 345
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 75.8 bits (178), Expect = 3e-15
Identities = 44/112 (39%), Positives = 61/112 (54%)
Frame = +3
Query: 102 KEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 281
++K H+NI IGHVD GK+T T I KC ++G+ SF +DK
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQIDK 93
Query: 282 LKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVL 437
E+ RGITI A ++ET + +D PGH D+IKNMITG + D A++
Sbjct: 94 APEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAII 145
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 52.4 bits (120), Expect = 3e-08
Identities = 35/105 (33%), Positives = 50/105 (47%)
Frame = +3
Query: 120 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 299
N+ +I H+D+GK+T T ++Y G F + G V+D L AER+
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGDT----VMDYLPAERQ 76
Query: 300 RGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAV 434
RGITI+ A F + +ID PGH DF + + D AV
Sbjct: 77 RGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAV 121
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 41.5 bits (93), Expect = 5e-05
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Frame = +3
Query: 120 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 299
N VI H+D GKST + ++ G I++ + F LDKL+ ER
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINEHNF-----------RNQF-----LDKLEVERR 103
Query: 300 RGITIDI----ALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVL 437
RGIT+ ++ + Y + +ID PGH DF ++ + + +L
Sbjct: 104 RGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCIL 153
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 40.3 bits (90), Expect = 1e-04
Identities = 38/117 (32%), Positives = 52/117 (44%), Gaps = 3/117 (2%)
Frame = +3
Query: 96 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYA 266
MGK N+ VI HVD GKST T L+ K G I K +F + A E +G +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72
Query: 267 WVLDKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVL 437
+ L AE D+ T + V +ID+PGH DF + D A++
Sbjct: 73 TAIS-LFAEMTDDDMKDMKEPADGTD-FLVNLIDSPGHVDFSSEVTAALRVTDGALV 127
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 40.3 bits (90), Expect = 1e-04
Identities = 38/117 (32%), Positives = 52/117 (44%), Gaps = 3/117 (2%)
Frame = +3
Query: 96 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYA 266
MGK N+ VI HVD GKST T L+ K G I K +F + A E +G +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72
Query: 267 WVLDKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVL 437
+ L AE D+ T + V +ID+PGH DF + D A++
Sbjct: 73 TAIS-LFAEMTDDDMKDMKEPADGTD-FLVNLIDSPGHVDFSSEVTAALRVTDGALV 127
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 39.9 bits (89), Expect = 2e-04
Identities = 40/125 (32%), Positives = 55/125 (44%), Gaps = 19/125 (15%)
Frame = +3
Query: 120 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 299
NI + H+DSGK+T T ++Y G I K+ E+ +G +D ++ ERE
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMDFMELERE 110
Query: 300 RGITIDIA----LWK---------------FETGKYYVTIIDAPGHRDFIKNMITGTSQA 422
+GITI A W+ FE Y + IID PGH DF +
Sbjct: 111 KGITIQSAATHCTWERTVDQIEANEKQKTDFEK-SYNINIIDTPGHIDFTIEVERALRVL 169
Query: 423 DCAVL 437
D AVL
Sbjct: 170 DGAVL 174
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 31.5 bits (68), Expect(2) = 0.006
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +3
Query: 243 GKGSFKYAWVLDKLKAERERGITIDIALWK--FETGKYYVTIIDAPGHRDFIKNMITGTS 416
GK + A+ + + GIT I + F+ G ++T +D PGH F G +
Sbjct: 183 GKTTLLDAFRKSTIASTEHGGITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGAN 242
Query: 417 QADCAVL 437
AD VL
Sbjct: 243 IADIVVL 249
Score = 22.2 bits (45), Expect(2) = 0.006
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +3
Query: 123 IVVIGHVDSGKST 161
+ ++GHVD GK+T
Sbjct: 174 VTLMGHVDHGKTT 186
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 30.3 bits (65), Expect = 0.14
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 2/105 (1%)
Frame = +3
Query: 129 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA--QEMGKGSFKYAWVLDKLKAERER 302
++GHVD+GK+ +L + +++ E Q++G F + K K ++
Sbjct: 489 ILGHVDTGKTKLLDNL-------RRSNVQEGEAGGITQQIGATYFPIESIKQKTKVVNKK 541
Query: 303 GITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVL 437
G K + + IID PGH F GTS + A+L
Sbjct: 542 G--------KLQYNIPGLLIIDTPGHESFTNLRSRGTSLCNIAIL 578
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 29.1 bits (62), Expect = 0.31
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +3
Query: 276 DKLKAER-ERGITIDIALWKFETGKYYV--TIIDAPGHRDFIKN 398
+K++A+ E+ + I+I + E +++ T+ID PG DFI N
Sbjct: 60 EKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 29.1 bits (62), Expect = 0.31
Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 7/111 (6%)
Frame = +3
Query: 120 NIVVIGHVDSGKSTTTGHLIYKCGGIDKR---TIEKFEKEAQEMGKG----SFKYAWVLD 278
N ++ HVD GK+T L+ G I + T+ + E+ +G S +
Sbjct: 21 NFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITRGITMKSSAISLFFK 80
Query: 279 KLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCA 431
+ E+ + D Y + +ID+PGH DF + + + D A
Sbjct: 81 VISQNDEKRVEKD----------YLINLIDSPGHVDFSSEVSSASRLCDGA 121
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 27.5 bits (58), Expect = 0.96
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 351 YVTIIDAPGHRDFIKNMITGTSQADCAVL 437
+V+ +D PGH + M+ G + D A+L
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALL 137
Score = 25.0 bits (52), Expect = 5.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 90 PKMGKEKVHINIVVIGHVDSGKST 161
P + + INI IGHV GKST
Sbjct: 15 PAIISRQATINIGTIGHVAHGKST 38
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 27.1 bits (57), Expect = 1.3
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -3
Query: 307 IPRSRSAFSLSNTQAYLKEPLPISWASFSNFSMVRLSIPPH 185
IP+ A S+ N++ + ++ LP + S V+L +P H
Sbjct: 173 IPKKNPARSVCNSKLFNEDTLPAEFEEVSISPPVKLELPTH 213
>SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 524
Score = 26.6 bits (56), Expect = 1.7
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = +3
Query: 252 SFK-YAWVLDKLKA-ERERGITID-IALWKFETGKYYVTIIDAPGHRDFIKNMIT 407
+FK Y L+ LK E++ G++ID + F+ G + + PG+ DF+ N ++
Sbjct: 3 AFKPYTEALEVLKKYEKKDGLSIDDLIRHNFQGGLTFNDFLILPGYIDFVPNNVS 57
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 2.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 187 AVVSTNVPSKSSRRKPRKWVRVPS 258
A++S + K + +P KWV VPS
Sbjct: 224 ALISNGLKVKETSEEPEKWVVVPS 247
>SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subunit
Rpb11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 123
Score = 25.8 bits (54), Expect = 2.9
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = -2
Query: 434 HGAVSLRRSSDHVLDEISVSRSVDDGDIVFAGFELP 327
+ AV DH L + ++ + D ++FAG+++P
Sbjct: 28 NAAVVTLEKEDHTLANMLANQLLSDERVLFAGYKVP 63
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 2.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 337 SNFQRAISMVIPRSRSAFSLSNTQAYLKEPLPISWASFSNFSMV 206
S F IS+ +P FSL+ ++ K LPI W S + S V
Sbjct: 403 STFGVNISVGVPTGSITFSLNWSRLGQKISLPIMWCSVFDRSAV 446
>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 25.0 bits (52), Expect = 5.1
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -2
Query: 437 KHGAVSLRRSSDHVLDEISVSRSVDDGDIVFAGFELPE 324
K G V + + V+DE ++ ++D+G + AG ++ E
Sbjct: 236 KRGIVIVNTARGAVMDEAALVEALDEGIVYSAGLDVFE 273
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 25.0 bits (52), Expect = 5.1
Identities = 8/20 (40%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +2
Query: 308 HHRY-CSLEVRNRQILCHHH 364
HH++ C L V+N+++ H H
Sbjct: 196 HHKFFCDLCVKNKKVFTHEH 215
>SPAC17G8.04c |arc15|arc5, arc5|ARP2/3 actin-organizing complex
subunit Arc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 24.6 bits (51), Expect = 6.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 328 QRAISMVIPRSRSAFSLSNTQAYLKEPLPISWASFSN 218
Q A+S +IP++RSA N LK L S+ + N
Sbjct: 33 QAAVSQLIPQARSAIQTGNALQGLKTLL--SYVPYGN 67
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 24.2 bits (50), Expect = 8.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 123 IVVIGHVDSGKSTTTGHLIYKC 188
IVV+G SGKST + +C
Sbjct: 115 IVVVGETGSGKSTQIPQFLNEC 136
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 24.2 bits (50), Expect = 8.9
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +3
Query: 126 VVIGHVDSGKSTTTGHLIYKCG 191
+V+GH GK+T +Y+ G
Sbjct: 45 IVLGHTGCGKTTQIPQFLYEAG 66
>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 381
Score = 24.2 bits (50), Expect = 8.9
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +2
Query: 374 WTQRFHQEHDHWN 412
W Q F Q+H +WN
Sbjct: 258 WQQSFLQDHGYWN 270
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,756,346
Number of Sequences: 5004
Number of extensions: 34476
Number of successful extensions: 147
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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