Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_N07
         (438 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                128   3e-30
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                99   2e-21
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           90   6e-19
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              58   4e-09
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     48   4e-06
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.011
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              34   0.045
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    34   0.059
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)                  33   0.10 
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               29   2.2  
SB_52347| Best HMM Match : TPR_1 (HMM E-Value=0)                       28   2.9  
SB_6742| Best HMM Match : EGF_CA (HMM E-Value=5.40004e-41)             28   2.9  
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_22789| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.1  
SB_4624| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.1  
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              27   6.8  
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              27   6.8  
SB_8252| Best HMM Match : rve (HMM E-Value=0.13)                       27   6.8  
SB_9892| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0013)          27   8.9  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  128 bits (308), Expect = 3e-30
 Identities = 58/60 (96%), Positives = 59/60 (98%)
 Frame = +3

Query: 240 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQ 419
           MGKGSFKYAWVLDKLKAERERGITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 1   MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 98.7 bits (235), Expect = 2e-21
 Identities = 44/49 (89%), Positives = 47/49 (95%)
 Frame = +3

Query: 96  MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 242
           M KEK+HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 90.2 bits (214), Expect = 6e-19
 Identities = 37/86 (43%), Positives = 60/86 (69%)
 Frame = +3

Query: 180 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETGKYYVT 359
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + ER++G T+++    F+T   + T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFT 225

Query: 360 IIDAPGHRDFIKNMITGTSQADCAVL 437
           ++DAPGH+ F+ NMI+G +QAD  VL
Sbjct: 226 LLDAPGHKSFVPNMISGATQADLGVL 251


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 57.6 bits (133), Expect = 4e-09
 Identities = 23/42 (54%), Positives = 33/42 (78%)
 Frame = +3

Query: 312 IDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVL 437
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAIL 42


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 47.6 bits (108), Expect = 4e-06
 Identities = 28/103 (27%), Positives = 49/103 (47%)
 Frame = +3

Query: 129 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGI 308
           +I H D+GK+T T  L+   G I         +EA  +     K     D ++ ER+RGI
Sbjct: 15  IISHPDAGKTTLTEKLLLFGGAI---------QEAGAVKSNKIKKGATSDFMEIERQRGI 65

Query: 309 TIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVL 437
           ++  ++  F      + I+D PGH+DF ++     +  D  ++
Sbjct: 66  SVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIV 108


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 36.3 bits (80), Expect = 0.011
 Identities = 25/65 (38%), Positives = 31/65 (47%)
 Frame = +3

Query: 120  NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 299
            N  ++ HVD GKST    L+   G I K +  K                 VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986

Query: 300  RGITI 314
            RGIT+
Sbjct: 1987 RGITV 1991


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 34.3 bits (75), Expect = 0.045
 Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
 Frame = +3

Query: 102 KEKV-HINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 272
           KE++ + NI V+GHVDSGK++    L         DK    +      ++G  SF+ A +
Sbjct: 30  KERILNFNIGVLGHVDSGKTSLAKALSTTASTASFDKNPQSQERGITLDLGFSSFQVA-L 88

Query: 273 LDKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITG 410
            + L   R  G   D+           +T++D PGH   IK +I G
Sbjct: 89  PEHL---RSAGSEHDLL---------QMTLVDCPGHASLIKTIIGG 122


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 33.9 bits (74), Expect = 0.059
 Identities = 38/113 (33%), Positives = 53/113 (46%), Gaps = 6/113 (5%)
 Frame = +3

Query: 105 EKVHI-NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 281
           +K++I N+ VI HVD GKST T  L+ K G I           A + G+  F      D 
Sbjct: 14  KKLNIRNMSVIAHVDHGKSTLTDSLVSKAGII----------AAAKAGETRF-----TDT 58

Query: 282 LKAERERGITID---IALWKF--ETGKYYVTIIDAPGHRDFIKNMITGTSQAD 425
            K E++R ITI    I+L+    E+   Y+T    P  R F+ N+I      D
Sbjct: 59  RKDEQDRCITIKSTAISLYYELPESDFEYITQPKDPKERGFLINLIDSPGHVD 111


>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
          Length = 347

 Score = 33.1 bits (72), Expect = 0.10
 Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 9/109 (8%)
 Frame = +3

Query: 111 VHINIVVIGHVDSGKST-----TTGHLIYKCGGIDKRTI-EKFEKEA---QEMGKGSFKY 263
           + + + V+G+VD+GKST     T G L    G   +R    K E E+     +G     +
Sbjct: 228 MEVRVAVVGNVDAGKSTLLGVLTHGELDNGRGTARQRLFRHKHEMESGRTSSVGNDILGF 287

Query: 264 AWVLDKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITG 410
                 +    + G  +D A    E+ K  +T ID  GH  ++K  I G
Sbjct: 288 DNTGQVVNKAEQHGANVDWAKICKESSK-VITFIDLAGHERYLKTTIFG 335


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 12/45 (26%), Positives = 18/45 (40%)
 Frame = +3

Query: 303 GITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVL 437
           GIT  I  +  + G   +  +D PGH  F      G    D  ++
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVII 167


>SB_52347| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 687

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 427 QSA*DVPVIMFLMKSLCPGASMMVT*YLPVSNFQRAISMVI 305
           QSA DV ++  L   L  G + ++  +LP SNF   +  V+
Sbjct: 335 QSAKDVRILAVLAMLLTIGLAFLIVPFLPASNFFFRVGFVV 375


>SB_6742| Best HMM Match : EGF_CA (HMM E-Value=5.40004e-41)
          Length = 653

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
 Frame = +2

Query: 209 HRKVREGSPGNG*GFLQIRLGIGQTKGRA*AWYHHRYCSLEVRNRQILCH--HHRRSWTQ 382
           H  V    P  G       L   Q K  +   +HHRYC + V       H  HHRR   +
Sbjct: 58  HVMVNVSQPSGGKLCFSFELSGFQGKNVSSFDHHHRYCIIIVTVSWSFDHHNHHRR---R 114

Query: 383 RFHQEH 400
           R HQ H
Sbjct: 115 RRHQHH 120


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 117 INIVVIGHVDSGKSTTTGHLIY 182
           I + V+G+V+SGKST  G L Y
Sbjct: 113 IRMAVLGNVESGKSTLLGVLTY 134


>SB_22789| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 796

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = +3

Query: 129 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKG-SFKY-AWVLDKLKAERER 302
           ++G VD GK+   G + Y+ G   + T+E  +       KG ++K+    +D  K   E+
Sbjct: 623 IVGTVDIGKTVDIGKVSYEKGWTYEFTVETVDIGKVSDAKGRTYKFIVETVDIGKVSYEK 682

Query: 303 GITIDIALWKFETGK 347
           G T    +   + GK
Sbjct: 683 GRTYKFIVETVDIGK 697


>SB_4624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 312 W*YHAHARPLVCPIPKRI*RNPYPF 238
           W +H H+RP+  PIP  + + P  +
Sbjct: 130 WQFHQHSRPMAVPIPYYLYQAPIQY 154


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 360 IIDAPGHRDFIKNMITGTSQADCAVL 437
           IID PGH  F      G+S  D A+L
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAIL 707


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +3

Query: 279 KLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVL 437
           + K E ER ITI +         Y    +D PGH   +  M+ G +  D A+L
Sbjct: 49  RFKNELERNITIKLG--------YANAKVDCPGHDILMATMLNGAAVMDAALL 93


>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
          Length = 264

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 356 HHHRRSWTQRFHQEHDH 406
           HHHRR   +R H  H H
Sbjct: 238 HHHRRRRRRRHHHHHHH 254


>SB_9892| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0013)
          Length = 663

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 213 EKFEKEAQEMGKGSFKYAWVLDKLKAERE 299
           +++ K  +EM   + K  W  +KLKAE E
Sbjct: 42  KEYSKLKEEMNSDAVKVKWAQNKLKAELE 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,221,496
Number of Sequences: 59808
Number of extensions: 265401
Number of successful extensions: 815
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)