Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_N06
         (595 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6783| Best HMM Match : Porphobil_deamC (HMM E-Value=5.8)           140   8e-34
SB_20385| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.23 
SB_23832| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_5360| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.6  
SB_23022| Best HMM Match : CUB (HMM E-Value=0)                         29   2.1  
SB_36985| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_9495| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.8  
SB_7305| Best HMM Match : Extensin_2 (HMM E-Value=0.043)               29   3.7  
SB_6508| Best HMM Match : AMP-binding (HMM E-Value=2.8026e-45)         29   3.7  
SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33)                   29   3.7  
SB_3165| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.7  
SB_41190| Best HMM Match : Extensin_2 (HMM E-Value=0.0029)             29   3.7  
SB_16962| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_14110| Best HMM Match : DUF858 (HMM E-Value=2)                      28   6.5  
SB_29100| Best HMM Match : TPMT (HMM E-Value=5.4e-33)                  27   8.6  

>SB_6783| Best HMM Match : Porphobil_deamC (HMM E-Value=5.8)
          Length = 382

 Score =  140 bits (339), Expect = 8e-34
 Identities = 59/115 (51%), Positives = 84/115 (73%)
 Frame = +3

Query: 33  IMSADQVFHSRSEGIPSEGVKDQYADGKAARAWNKFIGDSNERTQNYKDFLIGLLKKHGC 212
           +MS D V+ +RS G+P+ G+ DQYADGKAA+ W  +IG   +RT++Y++F   LL++   
Sbjct: 148 VMSMDGVYRTRSLGVPATGIPDQYADGKAAKVWQHYIGGHKKRTESYREFFCNLLRERNI 207

Query: 213 KKVLDGACGTGIDSMMLVDEGFNLVSVDASDKMLKHALKARWEKRKNPKYDEWVI 377
             VLD +CGTG+DS+ML++ GF + SVDASDKMLK AL+ RW +RK   +D+W I
Sbjct: 208 HNVLDVSCGTGVDSIMLLENGFCVTSVDASDKMLKDALRIRWNRRKEEPFDKWGI 262


>SB_20385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 603

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 3/152 (1%)
 Frame = +3

Query: 138 FIGDSNERTQNYKDFLIGLLKKHGCKKVLDGACGTGIDSMMLVDEGFNLV--SVDASDKM 311
           F  D    T+ + + L    +K   K +L+  CG G     L++EG+N    + D S + 
Sbjct: 411 FFKDRRWTTREFTELLNVEDEKLNEKVLLEAGCGVGNLINPLLEEGYNFYFHACDFSPRA 470

Query: 312 LKHALKARWEKRKNPKYDEWVIEEANWETLPRDIENFYHGASFDAVICLGNSFAHLLDEY 491
           +          +++P YDE  +     +    D+       S D    +   F  L   +
Sbjct: 471 VNFV-------KESPFYDEAKVNAFQCDLTKDDLLENIPACSVDIATLI---FV-LSAIH 519

Query: 492 EDQRIQKMCLKNFAKCLKPGGLLFI-DHRNYD 584
            D+ I    L N  K LKPGGLL + D+  YD
Sbjct: 520 PDKMI--TALLNIFKVLKPGGLLLLRDYGLYD 549


>SB_23832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 706

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 30/112 (26%), Positives = 49/112 (43%)
 Frame = +3

Query: 66  SEGIPSEGVKDQYADGKAARAWNKFIGDSNERTQNYKDFLIGLLKKHGCKKVLDGACGTG 245
           S  I  EG+ +  A     R W+  + +  +R   YK  +   +  +GC  VLD   G+G
Sbjct: 117 SSTIAREGL-ESVASALVER-WHFRMLNDRQRNLAYKKAISNAVS-NGCDIVLDIGSGSG 173

Query: 246 IDSMMLVDEGFNLVSVDASDKMLKHALKARWEKRKNPKYDEWVIEEANWETL 401
           I SM  V  G   V    + +++K  +     +++N   D+  IE    E L
Sbjct: 174 ILSMFAVQAGAKKVYACFNVRIVK-VIGGEQLEQENTHLDQEAIEPYTTECL 224


>SB_5360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/63 (23%), Positives = 30/63 (47%)
 Frame = -1

Query: 457 RQMTASNEAPW*KFSMSRGNVSQLASSITHSSYFGFFLFSHLALSACFNILSEASTETRL 278
           R+      A W ++++  GN++ L  +  H +++ +FL   +       +LS A  ET  
Sbjct: 401 RRSPTQEAADWIEYTLRHGNLTHLRPASVHLTWYQYFLLDVMLFMGVV-LLSVAMRETSP 459

Query: 277 KPS 269
            P+
Sbjct: 460 PPT 462


>SB_23022| Best HMM Match : CUB (HMM E-Value=0)
          Length = 1307

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/62 (27%), Positives = 33/62 (53%)
 Frame = +1

Query: 298  LLTKC*STRSKPGGRRGKTQNMMNG*SKRLIGKRYRATSRTFTMALRSMRSSALEIPSPI 477
            L+T+  ST   PG ++  ++ +++  S  ++   +RATS    +   S+ +S   +PS  
Sbjct: 937  LITRLISTSIVPGVKQTSSKLLVSSHSTPILTSIHRATSTRNVLEPSSIMTSTSILPSTS 996

Query: 478  SW 483
            SW
Sbjct: 997  SW 998


>SB_36985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 406 ATSRTFTMALRSMRSSALEIPSPISWTSTKISG 504
           A +R    A   MR    +IPS I+W  T++SG
Sbjct: 118 AAARNVIQADAMMRKPGFKIPSIINWHGTRVSG 150


>SB_9495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +3

Query: 399 LPRDIENFYHGASFDAVICLGNSFAHLLDEYEDQRIQKM 515
           LP D+ENF HG+  + V+ +  SF+  +D+     + ++
Sbjct: 411 LPADLENFMHGSGDEGVVLV--SFSTYMDDMNQNVLDRL 447


>SB_7305| Best HMM Match : Extensin_2 (HMM E-Value=0.043)
          Length = 908

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
 Frame = -1

Query: 316 FNILSEASTETRLKPSSTSIMESIPVPQAPSSTFL-----HPCFF--KSPMRKSL*FCVL 158
           F  L   +T     PS+T +  +IP PQ P  T L     HP  F    P + SL F + 
Sbjct: 684 FRTLENLATLRYFGPSNTLLHFAIPHPQIPHYTSLFRTLKHPTTFPYSGPSKTSLHFAIS 743

Query: 157 SLLSP--MNLFH 128
              +P   +LFH
Sbjct: 744 DPRTPYYTSLFH 755


>SB_6508| Best HMM Match : AMP-binding (HMM E-Value=2.8026e-45)
          Length = 1038

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -1

Query: 388 LASSITHSSYFGFFLFSHLALSACFNILSEASTETRLKPSST 263
           LA S T+        + HLA S+ +  L+++ST  RL  SST
Sbjct: 808 LADSSTYEHLADSCTYEHLADSSTYEHLADSSTYARLADSST 849


>SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33)
          Length = 958

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
 Frame = -1

Query: 316 FNILSEASTETRLKPSSTSIMESIPVPQAPSSTFL-----HPCFF--KSPMRKSL*FCVL 158
           F  L   +T     PS+T +  +IP PQ P  T L     HP  F    P + SL F + 
Sbjct: 633 FRTLENLATLRYFGPSNTLLHFAIPHPQIPHYTSLFRTLKHPTTFPYSGPSKTSLHFAIS 692

Query: 157 SLLSP--MNLFH 128
              +P   +LFH
Sbjct: 693 DPRTPYYTSLFH 704


>SB_3165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1183

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 21/82 (25%), Positives = 36/82 (43%)
 Frame = -1

Query: 400 NVSQLASSITHSSYFGFFLFSHLALSACFNILSEASTETRLKPSSTSIMESIPVPQAPSS 221
           +++  AS  + +S+  F  F+       F I   AST +   P+S +   S+  P +P+S
Sbjct: 655 SLTSFASFTSFTSFTSFASFTSFTSFTSFAIALLASTASPASPASLASPASLASPASPAS 714

Query: 220 TFLHPCFFKSPMRKSL*FCVLS 155
               P    SP   +  F + S
Sbjct: 715 -LASPASLASPASTTTAFYLAS 735


>SB_41190| Best HMM Match : Extensin_2 (HMM E-Value=0.0029)
          Length = 476

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 19/87 (21%), Positives = 40/87 (45%)
 Frame = -3

Query: 377 DYPFIIFWVFPLLPPGFERVLQHFVRSVN*NKIETFVYQHHGVNPCSASTVQHFLASVFF 198
           D P  ++  +  +PP   R  ++    V  N I  F+Y +HGV    ++ + HF+ + + 
Sbjct: 292 DIPHFMY-TYHGVPPNDIRHFRYTYHGVPSNDIPHFMYTYHGV---PSNDIPHFMCT-YH 346

Query: 197 QKPDEEVFIILCSFITVSNEFVPRSSC 117
             P  ++   + ++  V +  +P   C
Sbjct: 347 GVPSNDIPHFMYTYHGVPSNDIPHFMC 373


>SB_16962| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -1

Query: 493 SYSSKRWAKEFPRQMTASNEAPW*KFSMSRGNVSQLASSITHSSYFGFFL 344
           SYS ++W KE P+     +     K S      S L S    + YFG F+
Sbjct: 1   SYSQQKWFKEMPKPGNVQSSY---KLSGLNQGPSDLQSDALPTEYFGTFM 47


>SB_14110| Best HMM Match : DUF858 (HMM E-Value=2)
          Length = 207

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 216 KVLDGACGTGIDSMMLVDEGF-NLVSVDASDKMLKHALKARWEKRKNPKYDE 368
           ++LD   GTG+ +  LV  GF N+ ++D S+K  + A K    K     Y E
Sbjct: 69  RILDVGSGTGLQAEGLVKHGFTNIDALDPSEKSHEVARKKNLYKNYITDYLE 120


>SB_29100| Best HMM Match : TPMT (HMM E-Value=5.4e-33)
          Length = 242

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 216 KVLDGACGTGIDSMMLVDEGFNLVSVDASDKMLK 317
           +VL   CG  +D + L D+G  +V V+ + K ++
Sbjct: 55  RVLLPLCGKSLDLLWLADQGCQVVGVEGASKPIE 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,136,076
Number of Sequences: 59808
Number of extensions: 402992
Number of successful extensions: 1350
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1342
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)