Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_N06
         (595 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   5.2  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              21   6.9  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              21   6.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   6.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   6.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.9  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   9.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.1  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 344 LLPPGFERVLQHFVRSV 294
           +LP GF +VL H V+ +
Sbjct: 68  MLPTGFRKVLVHNVKEL 84


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -1

Query: 328 LSACFNILSEASTETRLKPSSTSIMESIPVPQAPSSTFLH 209
           L  C  +    + E R +     I  +IPVPQA +   ++
Sbjct: 29  LGNCVRVSPVITIEPRRRKFHKPITLTIPVPQAANKGMIN 68


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/38 (23%), Positives = 18/38 (47%)
 Frame = +3

Query: 408 DIENFYHGASFDAVICLGNSFAHLLDEYEDQRIQKMCL 521
           D++ F+H  +      +   F H+ DE +     K+C+
Sbjct: 105 DLKTFFHKIALTCEDDVHRKFLHVNDECDVALSFKLCM 142



 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 503 DTEDVPKEFRKVSQTGRSTIHR 568
           D ED+   F K++ T    +HR
Sbjct: 102 DDEDLKTFFHKIALTCEDDVHR 123


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 243 GIDSMMLVDEGFNLVSVDASDKMLK 317
           G+DS     EGF   +VD   ++L+
Sbjct: 388 GLDSQFCTVEGFITAAVDEWPRLLR 412


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 243 GIDSMMLVDEGFNLVSVDASDKMLK 317
           G+DS     EGF   +VD   ++L+
Sbjct: 441 GLDSQFCTVEGFITAAVDEWPRLLR 465


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 247 IPVPQAPSSTFLHP 206
           +PVPQ   ST L P
Sbjct: 796 VPVPQVNDSTILSP 809


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 254 GVNPCSASTVQHFL 213
           GV+ C A+ V HFL
Sbjct: 25  GVDECQATPVIHFL 38


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 446 GHLPWKFLRPSLGRVRRSADTEDVPK 523
           GH P   L+P  G     +DT D P+
Sbjct: 207 GHNPSSGLQPGEGLPMWKSDTSDGPE 232


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,343
Number of Sequences: 438
Number of extensions: 3413
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)