Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_N04
         (602 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   1.5  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.0  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   2.0  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   8.0  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 313 HTLHCHGLGEGQVRKGRSSPDHIKK 387
           H  H HG     V  GRS   ++KK
Sbjct: 595 HPFHLHGYAFNVVGIGRSPDQNVKK 619


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 403 GKSEHMYE*ASDNDTGKLVLPARVLHVR 486
           G    +Y   ++ D+  LVLP+  LH+R
Sbjct: 161 GSDGSLYNHTANYDSKYLVLPSGELHIR 188


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 313 HTLHCHGLGEGQVRKGRSSPDHIKK 387
           H  H HG     +  GRS   ++KK
Sbjct: 595 HPFHLHGYAFNVIGIGRSPDQNVKK 619


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 555 YSIGQTKGEPPSPLQVSLPGSPP 487
           YSIG  K  P   L++    +PP
Sbjct: 202 YSIGAKKSPPEKHLRLRRDTAPP 224


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,897
Number of Sequences: 336
Number of extensions: 4215
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15248386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)