Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_N04
(602 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0090 - 13391028-13391117,13391369-13391502,13391532-133916... 31 0.93
02_02_0522 - 11161385-11161537,11162513-11162668,11164176-111642... 30 1.6
11_06_0680 + 26243003-26243098,26243370-26243470,26244312-26244741 29 2.1
11_01_0795 + 6994597-6994774,6994812-6995092,6997289-6997335,699... 29 2.8
12_02_0181 - 14989506-14989614,14989651-14989781 28 5.0
12_01_1096 + 11494100-11494263,11494489-11494633,11494694-11494741 28 5.0
05_04_0454 + 21383068-21384525 28 5.0
07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047... 28 6.5
07_01_1026 - 8865924-8866225,8867051-8867297,8867561-8867587 28 6.5
03_05_0192 + 21809251-21809413,21809553-21809720,21809858-21810120 28 6.5
>11_04_0090 -
13391028-13391117,13391369-13391502,13391532-13391659,
13391684-13391718,13391719-13392159
Length = 275
Score = 30.7 bits (66), Expect = 0.93
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 558 SYSIGQTKGEPPSPLQVSLPGSPPAHMKDSCR*NKLP 448
S + + K PP+ LQ LP +PP H SC ++ P
Sbjct: 25 SKPLSRAKTPPPALLQAILPTAPPKHHSLSCSGSQAP 61
>02_02_0522 -
11161385-11161537,11162513-11162668,11164176-11164298,
11164404-11164466,11164512-11164577,11165128-11165232,
11165336-11165435,11165520-11165590,11166037-11166093,
11167215-11167292,11167367-11167441,11168490-11168540,
11169015-11169094,11169560-11169660,11169749-11169810,
11170084-11170590
Length = 615
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 361 RSSPDHIKKGGSSRGKSEHMYE*ASDNDTGKLV 459
R SPDH++KG S + H + +D+ TG LV
Sbjct: 582 RKSPDHLEKGKSLKETGRHTWS-GNDDGTGFLV 613
>11_06_0680 + 26243003-26243098,26243370-26243470,26244312-26244741
Length = 208
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Frame = +3
Query: 435 RQRYWEACSTCTSPSCALEVNPARTLARETEV----LPWS-VLWSTRTTATYKNGIVT 593
++RYW C+T +S S + + T A LPW L +R T Y +G +T
Sbjct: 46 KRRYWFPCATLSSDSIGADAKRSSTRASAASTASASLPWGHHLPPSRYTLLYAHGFLT 103
>11_01_0795 +
6994597-6994774,6994812-6995092,6997289-6997335,
6997550-6997772
Length = 242
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +3
Query: 390 WKFPW*IGTHV*ISFRQ--RYWEACSTCTSPSCALEVNPA 503
WK+P +G ++ + ++W C C+ PSC E NPA
Sbjct: 88 WKWPVGLGFDWAVARGRGPKFWVCCGICSLPSCGAE-NPA 126
>12_02_0181 - 14989506-14989614,14989651-14989781
Length = 79
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 137 KEIYPYQDREVESVAIHKDFDSVTMFYDISILFL 238
KE YP R + A+ KD T+F +++ILFL
Sbjct: 42 KECYP--SRLLLETAVRKDESKATLFVNVTILFL 73
>12_01_1096 + 11494100-11494263,11494489-11494633,11494694-11494741
Length = 118
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 38 SLIHPSAVLSAAHYVAKVPKLRVRAGEWDTQSTKEIYPYQDR 163
S++HP+ ++ + A WDTQ TKE+ PY R
Sbjct: 70 SMMHPNVEITRTGFRAVTTCRLPLTNPWDTQQTKEL-PYLSR 110
>05_04_0454 + 21383068-21384525
Length = 485
Score = 28.3 bits (60), Expect = 5.0
Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 9/132 (6%)
Frame = +1
Query: 124 HAEHQRDLPVSGQGGRKRCHT*RL*QRYNVLRHQ-HSIPEESNGNDTECRSSL---PPSE 291
++ QR + +GQ R++ + QR+ V H + ND + R + +
Sbjct: 285 YSHGQRQVYGNGQDQRQQLNNNGRDQRHQVYSSNCHDQRQPVYNNDQDQRQQVYNNGQDQ 344
Query: 292 RRTGY-AWHTLHCHGLGEGQVRKGRSSPDHIK----KGGSSRGKSEHMYE*ASDNDTGKL 456
RR G+ + + G+GQ++ G S+P+ + + G S G+ + A ++ G
Sbjct: 345 RRQGHHGYRKPESYQGGQGQLQYGYSAPNRQRQQQQQQGYSSGRPSAGGQYAGEDSYGSR 404
Query: 457 VLPARVLHVRWR 492
+PA H +R
Sbjct: 405 QIPANQQHQHFR 416
>07_03_1530 + 27502546-27502671,27503487-27503561,27504670-27504746,
27505576-27507522,27508478-27508946,27509898-27510079,
27510746-27511208,27511295-27511691,27511810-27511937,
27512106-27512273,27512452-27512559,27512830-27512838
Length = 1382
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 205 YNVL-RHQHSIPEESNGNDTECRSSLPPSERRTGYAWH 315
YN+ +H HS+ + D SS PP+ GYA H
Sbjct: 1113 YNIQEQHPHSVANNRSNMDPCVVSSHPPAPYNCGYAGH 1150
>07_01_1026 - 8865924-8866225,8867051-8867297,8867561-8867587
Length = 191
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +1
Query: 484 RWR*TRQGHLQGRRRFSLGLSYGVRGQPLR 573
RWR RQG GRR +GL+ G P R
Sbjct: 38 RWRWRRQGSSAGRRSRRVGLAERGSGAPAR 67
>03_05_0192 + 21809251-21809413,21809553-21809720,21809858-21810120
Length = 197
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 31 WWILDTSQRCS*RGALRCKSPEAAREGRRMG 123
WW +TS+RCS G L+ PE A G G
Sbjct: 115 WWEWETSRRCSHVG-LQAVVPEVASGGAHRG 144
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,602,279
Number of Sequences: 37544
Number of extensions: 524042
Number of successful extensions: 1610
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1608
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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