Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_N04
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    56   4e-10
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   0.43 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.43 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.43 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.0  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   9.3  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 55.6 bits (128), Expect = 4e-10
 Identities = 46/179 (25%), Positives = 76/179 (42%), Gaps = 7/179 (3%)
 Frame = +2

Query: 26  VSGGSLIHPSAVLSAAHYVA--KVPKLRVRAGEWDTQSTKEIYPYQDREVESVAIHKDFD 199
           + G ++I    VL+AAH +      KL +  GE D  S  E        +  V IH  +D
Sbjct: 187 ICGATIISKRYVLTAAHCIIDENTTKLAIVVGEHDWSSKTETNATVLHSINKVIIHPKYD 246

Query: 200 SVT----MFYDISILFLKSPMEMTPNVGVVCLPLKDE-PAMPGTRCIAMGWGKDKFGKEG 364
            +        DI++L  +  ++    VG  CLP +    +  G+    +GWG   F   G
Sbjct: 247 IIEKDDWQINDIALLKTEKDIKFGDKVGPACLPFQHFLDSFAGSDVTVLGWGHTSFN--G 304

Query: 365 RHQTILKKVEVPVVNRNTCMNKLQTTILGSLFYLHESFMCAGGEPGKDTCKGDGGSPLV 541
               IL+K  + ++ +  C       ++ +        MCA  + GKD C+ D G P++
Sbjct: 305 MLSHILQKTTLNMLTQVECYKYYGNIMVNA--------MCAYAK-GKDACQMDSGGPVL 354


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 365 DLPFRTCPSPNPWQCNVC 312
           DLP+RTC   NPW    C
Sbjct: 133 DLPWRTC--GNPWNTRYC 148


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 365 DLPFRTCPSPNPWQCNVC 312
           DLP+RTC   NPW    C
Sbjct: 186 DLPWRTC--GNPWNTRYC 201


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 537 KGEPPSPLQVSLPGSPP 487
           +G PP+P Q   PG PP
Sbjct: 36  RGSPPNPSQGPPPGGPP 52


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 17/76 (22%)
 Frame = +3

Query: 60  FLARRITLQKSR---SCA*GQENGTRRAPKRSTRIRTGRSK-----ALPYIKTL------ 197
           F   R+TL+  R   S   G  NG+ R+P+ ++R    R K     + P  +TL      
Sbjct: 298 FDEERLTLRIHRGRGSVHNGSNNGSPRSPESNSRCSVKREKIKISVSYPSTETLNTKCNT 357

Query: 198 ---TALQCSTTSAFYS 236
              T  +CS TS  YS
Sbjct: 358 LERTPSKCSQTSVHYS 373


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -2

Query: 415 VPIYHGNF 392
           VPIY+GNF
Sbjct: 342 VPIYYGNF 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,090
Number of Sequences: 438
Number of extensions: 5268
Number of successful extensions: 44
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)