Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_N04
(602 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g08570.1 68418.m01020 pyruvate kinase, putative similar to py... 31 0.78
At3g54460.1 68416.m06025 SNF2 domain-containing protein / helica... 30 1.0
At5g23630.1 68418.m02771 ATPase E1-E2 type family protein / halo... 29 1.8
At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product... 29 1.8
At3g21000.1 68416.m02655 expressed protein ; expression supporte... 29 3.1
At3g18090.1 68416.m02300 DNA-directed RNA polymerase family prot... 28 5.5
At2g25150.1 68415.m03008 transferase family protein similar to 1... 28 5.5
At1g72970.1 68414.m08439 glucose-methanol-choline (GMC) oxidored... 28 5.5
At5g51105.1 68418.m06337 expressed protein 27 7.2
At3g43160.1 68416.m04554 expressed protein merozoite surface pro... 27 7.2
At3g24860.1 68416.m03118 hydroxyproline-rich glycoprotein family... 27 9.6
At1g59540.1 68414.m06694 kinesin motor protein-related similar t... 27 9.6
>At5g08570.1 68418.m01020 pyruvate kinase, putative similar to
pyruvate kinase, cytosolic isozyme [Glycine max]
SWISS-PROT:Q42806
Length = 510
Score = 30.7 bits (66), Expect = 0.78
Identities = 21/81 (25%), Positives = 39/81 (48%)
Frame = +2
Query: 38 SLIHPSAVLSAAHYVAKVPKLRVRAGEWDTQSTKEIYPYQDREVESVAIHKDFDSVTMFY 217
S +H + +L+A K P++R T K+ P Q +E + + I D+D
Sbjct: 70 SAMHNTGILAAVMLDTKGPEIR-------TGFLKDGNPIQLKEGQEITITTDYDIQGDES 122
Query: 218 DISILFLKSPMEMTPNVGVVC 280
IS+ + K P+++ P ++C
Sbjct: 123 TISMSYKKLPLDVKPGNTILC 143
>At3g54460.1 68416.m06025 SNF2 domain-containing protein / helicase
domain-containing protein / F-box family protein similar
to SP|P36607 DNA repair protein rad8
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00646: F-box domain
Length = 1378
Score = 30.3 bits (65), Expect = 1.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 78 TLQKSRSCA*GQENGTRRAPKRSTRIRTG 164
T QK R C G+ +G R+ PK R+ +G
Sbjct: 82 TPQKRRKCVEGESSGKRKTPKSKRRVLSG 110
>At5g23630.1 68418.m02771 ATPase E1-E2 type family protein /
haloacid dehalogenase-like hydrolase familiy protein
similar to SP|O14072 Cation-transporting ATPase 4 (EC
3.6.3.-) {Schizosaccharomyces pombe}; contains InterPro
accession IPR001757: ATPase, E1-E2 type; contains Pfam
profile PF00702: haloacid dehalogenase-like hydrolase
Length = 1179
Score = 29.5 bits (63), Expect = 1.8
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Frame = +2
Query: 20 IYVSGGSLIHPSAVLSAAHYVAKVPKLRVRAG-----EWDTQSTKEIYPYQDREVESVAI 184
+ ++G + V H V+ + R+G +W + KEI PY ++E+E++A
Sbjct: 696 VMITGDQALTACHVAGQVHIVSNPVLILGRSGSGNEYKWVSPDEKEIIPYSEKEIETLAE 755
Query: 185 HKDF----DSVTMFYDISILFLKSP 247
D DS+ M S + P
Sbjct: 756 THDLCIGGDSIEMLQATSAVLRVIP 780
>At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product
[Arabidopsis thaliana] GI:871782
Length = 748
Score = 29.5 bits (63), Expect = 1.8
Identities = 22/74 (29%), Positives = 35/74 (47%)
Frame = +2
Query: 44 IHPSAVLSAAHYVAKVPKLRVRAGEWDTQSTKEIYPYQDREVESVAIHKDFDSVTMFYDI 223
IH S +A Y + P R + + Q + Y Y + ESV I K+ +SV +F ++
Sbjct: 386 IHESRPKTAV-YGGRSPDHREKISQEMGQRSSHAYNYLGSKAESVYIEKNEESVLLFPEL 444
Query: 224 SILFLKSPMEMTPN 265
+ SP E P+
Sbjct: 445 ----ILSPQERPPS 454
>At3g21000.1 68416.m02655 expressed protein ; expression supported
by MPSS
Length = 405
Score = 28.7 bits (61), Expect = 3.1
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Frame = +2
Query: 218 DISILFLKSPMEMTPNVGVVCLPLKDEPA----MPGTRCIAMGWGKDKFG-KEGRHQTIL 382
DI I+ +P+ MTP V + A + GT + G G K KEG+ +TI
Sbjct: 278 DIWIIHKMAPINMTPYVKYFTTLDRTFKATVGTVDGTVLLVEGKGDVKIRMKEGKKKTIR 337
Query: 383 KKVEVPVVNRN 415
+ VP +NRN
Sbjct: 338 NVIFVPGLNRN 348
>At3g18090.1 68416.m02300 DNA-directed RNA polymerase family protein
similar to SP|P38420 DNA-directed RNA polymerase II 135
kDa polypeptide (EC 2.7.7.6) (RNA polymerase II subunit
2) {Arabidopsis thaliana}; contains Pfam profiles
PF04560: RNA polymerase Rpb2 domain 7, PF04561: RNA
polymerase Rpb2 domain 2, PF04565: RNA polymerase Rpb2
domain 3, PF04566: RNA polymerase Rpb2 domain 4,
PF04567: RNA polymerase Rpb2 domain 5
Length = 1038
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 428 KLQTTILGSLFYLHESFMCAGGEPGKDTCK 517
K Q ++GS+ + +S +C E GK+ CK
Sbjct: 36 KKQDILIGSIPVMVKSVLCKTSEKGKENCK 65
>At2g25150.1 68415.m03008 transferase family protein similar to
10-deacetylbaccatin III-10-O-acetyl transferase
[gi:6746554], 2-debenzoyl-7,13-diacetylbaccatin
III-2-O-benzoyl transferase [gi:11559716] from Taxus
cuspidata; contains Pfam transferase family domain
PF00248; contains EST gb:R65039
Length = 461
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 251 EMTPNVGVVCLPLKDEPAMPGTRCIAMGWGKDKFGKEGRHQTILKKV 391
E T +VG++ P K +P+M G + M +D + R +KK+
Sbjct: 409 ESTVHVGMILKPSKSDPSMEGGVKVIMKLPRDAMVEFKREMATMKKL 455
>At1g72970.1 68414.m08439 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 594
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +2
Query: 20 IYVSGGSLIHPSAVLSAAHYVAKVPKLRVRAGEWDTQSTKEIYPYQDREV 169
+Y + ++ + ++A Y RAG WD + KE YP+ +RE+
Sbjct: 130 VYNARARVLGGGSCINAGFYSRADAAFVKRAG-WDPKLVKESYPWVEREI 178
>At5g51105.1 68418.m06337 expressed protein
Length = 123
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 363 PSFPNLSFPQPMAMQRVPGIAGS 295
P FP + FP P + PG+AGS
Sbjct: 24 PQFPPIMFPFPNPFKPSPGMAGS 46
>At3g43160.1 68416.m04554 expressed protein merozoite surface
protein 2 (MSP-2), EMBL:PFU72951, Plasmodium falciparum
Length = 295
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 108 GQENGTRRAPKRSTRIRTGRSKAL 179
G EN + R + STR + GRSK++
Sbjct: 124 GTENSSTRTAESSTRTKNGRSKSI 147
>At3g24860.1 68416.m03118 hydroxyproline-rich glycoprotein family
protein contains proline-rich domains,
INTERPRO:IPR000694
Length = 310
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 531 EPPSPLQVSLPGSPPAH 481
+PPSP Q + P SPP H
Sbjct: 27 QPPSPPQPTNPSSPPPH 43
>At1g59540.1 68414.m06694 kinesin motor protein-related similar to
kinesin motor protein (kin2) GI:2062751 from (Ustilago
maydis)
Length = 823
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 197 QSLYVWQRFRPPCPDTGRSLW 135
+ + V R RPP P+ G SLW
Sbjct: 2 EKICVAVRVRPPAPENGASLW 22
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,792,853
Number of Sequences: 28952
Number of extensions: 386337
Number of successful extensions: 1197
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1197
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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