Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_N03
         (584 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)             140   8e-34
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)        48   6e-06
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.30 
SB_49583| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.91 
SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_4001| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0056)           27   8.5  

>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score =  140 bits (339), Expect = 8e-34
 Identities = 65/124 (52%), Positives = 81/124 (65%)
 Frame = +2

Query: 167 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 346
           L EKR +NF IG DIQP RDLSRFVRWP+Y+++QRQK++L +RLKVPP INQFTQ LD+ 
Sbjct: 31  LIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALDRQ 90

Query: 347 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKK 526
           +   LFK+L KYRPET                   +E P K+P  ++ G N +T LVE K
Sbjct: 91  STVQLFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENK 150

Query: 527 KGSL 538
           K  L
Sbjct: 151 KAQL 154



 Score = 34.3 bits (75), Expect = 0.074
 Identities = 14/20 (70%), Positives = 19/20 (95%)
 Frame = +1

Query: 523 EEGQLVVIAHDVDPIELVLF 582
           ++ QLVVIAHDVDPIE+V++
Sbjct: 150 KKAQLVVIAHDVDPIEIVVW 169


>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 23/60 (38%), Positives = 29/60 (48%)
 Frame = +2

Query: 359 LFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKKKGSL 538
           LFK+L KYRPET                   +E P K+P  ++ G N +T LVE KK  L
Sbjct: 4   LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQL 63



 Score = 34.3 bits (75), Expect = 0.074
 Identities = 14/20 (70%), Positives = 19/20 (95%)
 Frame = +1

Query: 523 EEGQLVVIAHDVDPIELVLF 582
           ++ QLVVIAHDVDPIE+V++
Sbjct: 59  KKAQLVVIAHDVDPIEIVVW 78


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 34/115 (29%), Positives = 47/115 (40%)
 Frame = +1

Query: 97   DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 276
            DR+KS+GR++      A +  K S R E++ +   P      R     A  E  SH  S 
Sbjct: 978  DRQKSNGRNSRSVSPSAVKRTKGSKRSESRSVSRSPERDRKGRD---SAKKERQSHSESP 1034

Query: 277  GCVTASSQSAAANQPVHPDIR*NHSQRSVQDLGEIQARN*GSQERASKESRRSQG 441
              VT SS+     +P H   R      S       Q R   S  R  ++ RRS+G
Sbjct: 1035 QRVTKSSKERPRKRPRHQS-RERRPSSSPPRRSRPQ-RTSPSPRRTPEDRRRSRG 1087


>SB_49583| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +1

Query: 103 EKSSGRSTCGEES*AQEDCKPSIREENKELCY 198
           EK  G  TCG+ES    DC P  +E   E CY
Sbjct: 94  EKKEGCYTCGDESHIARDC-PEKKESPGESCY 124


>SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 832

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +2

Query: 230 SRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEK 379
           SR  RW  Y R+   KA+LQR  ++   I Q T  + K        +L K
Sbjct: 508 SRTFRWDPYSRMSTLKALLQRMEQLKTQIVQETCEIKKLEKLSRLVLLRK 557


>SB_4001| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0056)
          Length = 508

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = +1

Query: 229 IPFRAMAEIYSHPA-SKGCVTASSQSAAANQPVHPDIR*NHSQRSVQDLGEIQA 387
           +P     +   HP  S GC T SS S  A  PV PD    + Q     L E+ A
Sbjct: 65  LPVVTTVDSTGHPQLSSGCSTNSSSSQTAPFPVIPDTIIANMQSLFAKLDELYA 118


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,707,731
Number of Sequences: 59808
Number of extensions: 305239
Number of successful extensions: 703
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)