Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_N03
         (584 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...   117   7e-27
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)           117   7e-27
At2g26530.1 68415.m03183 expressed protein                             27   9.2  

>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score =  117 bits (281), Expect = 7e-27
 Identities = 58/124 (46%), Positives = 75/124 (60%)
 Frame = +2

Query: 167 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 346
           LFE+R K F IG  + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLDK 
Sbjct: 22  LFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKN 81

Query: 347 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKK 526
            A  LFKIL KYRPE                         K+P  ++ G N VT L+E+ 
Sbjct: 82  LATSLFKILLKYRPE-DKAAKKERLLNKAQAEAEGKPAESKKPIVVKYGLNHVTYLIEQN 140

Query: 527 KGSL 538
           K  L
Sbjct: 141 KAQL 144



 Score = 35.5 bits (78), Expect = 0.026
 Identities = 15/21 (71%), Positives = 19/21 (90%)
 Frame = +1

Query: 520 EEEGQLVVIAHDVDPIELVLF 582
           + + QLVVIAHDVDPIELV++
Sbjct: 139 QNKAQLVVIAHDVDPIELVVW 159


>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score =  117 bits (281), Expect = 7e-27
 Identities = 57/124 (45%), Positives = 75/124 (60%)
 Frame = +2

Query: 167 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 346
           LFE+R K F IG  + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLDK 
Sbjct: 23  LFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKN 82

Query: 347 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKK 526
            A  LFK+L KYRPE                         K+P  ++ G N VT L+E+ 
Sbjct: 83  LATSLFKVLLKYRPEDKAAKKERLVKKAQAEAEGKPS-ESKKPIVVKYGLNHVTYLIEQN 141

Query: 527 KGSL 538
           K  L
Sbjct: 142 KAQL 145



 Score = 35.5 bits (78), Expect = 0.026
 Identities = 15/21 (71%), Positives = 19/21 (90%)
 Frame = +1

Query: 520 EEEGQLVVIAHDVDPIELVLF 582
           + + QLVVIAHDVDPIELV++
Sbjct: 140 QNKAQLVVIAHDVDPIELVVW 160


>At2g26530.1 68415.m03183 expressed protein
          Length = 317

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 584 RKST-SSIGSTS*AMTTSCPSSSQQAW 507
           RK T SSI STS +   SC SSS + W
Sbjct: 209 RKGTLSSIPSTSSSACVSCKSSSSKKW 235


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,798,138
Number of Sequences: 28952
Number of extensions: 215309
Number of successful extensions: 529
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)