Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_N02
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.48 
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4...    29   0.84 
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    28   1.5  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    28   1.5  
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po...    27   1.9  
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    27   2.6  
SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom...    26   4.5  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    26   4.5  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    26   5.9  
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei...    25   7.8  

>SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 105

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 374 FITVSNVYFISQFEINSFNRSYFLI*VSEYCFSYVV 267
           F+  S    IS  ++N   R Y+ I    YCF Y++
Sbjct: 4   FVFESLCAMISTLKVNKIERGYWFIQCLRYCFIYII 39


>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
           4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 113 ELIISILEYSLWVDVTGQCQGREGKYGYYNLHV 15
           +L  + L+ ++WV VT   +   G YGY  LH+
Sbjct: 212 DLYSNNLKDAVWVAVTNYMKNLVGNYGYTELHI 244


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 19/77 (24%), Positives = 34/77 (44%)
 Frame = -1

Query: 632 MEWTVLCQFLIKFVFPTSLKVNCIYENTLCATVQRTRIHQIFDTFIGVVFNPSINNVSCF 453
           M   ++  F+  FV  T      ++ + L     R   + I+D F+G   NP +  +  F
Sbjct: 151 MSVAIITAFVCTFVLYTG---TLLFGDRLFDKPHRLSGNPIYDAFMGACLNPRLGKLLDF 207

Query: 452 FIFTEI*VLHFRIKHIS 402
            +F E+ +  F +  IS
Sbjct: 208 KMFFEVRIPWFILFFIS 224


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 21/82 (25%), Positives = 43/82 (52%)
 Frame = +3

Query: 375 LNDQFAVVSRDVFNSEVQNLNFGKNEEAANIINTWVEDHTNKRIKNLVDPSSLDSSTQCV 554
           L D   VV R V  +E  +++ G N   +  + +    +T+K+++ LV  SS+  + + +
Sbjct: 322 LGDNSLVVIRAVDLAEQIHVS-GINSFESKYLTSTGPKNTSKQLQGLVQFSSVSPNGELL 380

Query: 555 LVNAIYFKGSWKDKFDKELTQD 620
           L+++  F G      + +LT+D
Sbjct: 381 LMSSSSFNGHSVSVQEYDLTKD 402


>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 8/102 (7%)
 Frame = +3

Query: 96  NGNDQFTARMFNEVVKKNPDKSVILSAFSVMIPLAQLAIASTGESHDELLKAI------- 254
           N N Q  A    + + KN   S++    S     + L IAS   +H+ +   I       
Sbjct: 59  NANIQLLALTLTDAIVKNCKTSIVREISSRTFTDSLLKIASDSTTHNRVRSRIAVLVNEW 118

Query: 255 -DFPNDNVTKAVFTDLNQKVRSIKGVDLKLANKVYIANGNEL 377
            +    +   ++  D+ +K+R +  VDL+   K      NEL
Sbjct: 119 AEIMKKDPNMSLMQDICEKIRKLDIVDLRAPKKPEKEAMNEL 160


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 21/104 (20%), Positives = 44/104 (42%), Gaps = 3/104 (2%)
 Frame = -1

Query: 641 FVNMEWTVLCQFLIKFVFPTSLKVNCIYENTLCATVQRTRIHQIFDTFIG---VVFNPSI 471
           +V+ EW V+   +  +     L +   Y     AT +  ++H++    I    ++ +  +
Sbjct: 488 YVDSEWEVVPHNIASYTTIKELGIGA-YGQVKLATYKSNKVHEVILKSISKSRILLDSWM 546

Query: 470 NNVSCFFIFTEI*VLHFRIKHISGHNSKLII*FITVSNVYFISQ 339
            +     +  EI +LHF   H   +  K+I  F    N Y +++
Sbjct: 547 RDKDLGTVPMEISILHFLKAHSHPNIVKMITFFEDNENYYLLTE 590


>SPAC1805.16c |||purine nucleoside phosphorylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 425 HFRIKHISGHNSKLII*FI 369
           HF + H+ GH SKL   F+
Sbjct: 72  HFHVSHVPGHASKLYFAFL 90


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -2

Query: 460 AASSFLPKFKFCTSELNTSLDTTAN*SFNSLPLAMYTLLASLRSTPLIDLT 308
           A  +FL  F FC + +N SLD        +    +YTL+  L   P + +T
Sbjct: 289 ARLNFL-SFSFCVNPMNQSLDCNTTPHRRNASSIIYTLMYYLIIAPTLLIT 338


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = +3

Query: 264 NDNVTKAVFTDLNQKVRSIKGVDLKLANKVYIANGNELNDQFAVVSRDVFNSEVQNL 434
           ND + +A  +DL QK+         L N ++    ++  D+F+   R   +  + NL
Sbjct: 546 NDYIAQAGLSDLLQKIADTTDDKQALKNYLHSWKWDQQIDKFSTFIRKTLSETIDNL 602


>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
           Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
 Frame = +3

Query: 363 NGNELNDQFAVVSRDVFNSEVQNLNFGKNE----EAANIINTWVEDHTNKR 503
           NG ++ D   VV   VF  + QN    KNE    EA+    T V D T  +
Sbjct: 279 NGKQVGDLTLVVKSAVFREDKQNDENEKNENEPIEASESAPTNVSDSTEPK 329


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,803,351
Number of Sequences: 5004
Number of extensions: 57880
Number of successful extensions: 182
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)