Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_M23
         (492 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   1.2  
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    25   4.7  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   6.2  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 29/132 (21%), Positives = 58/132 (43%), Gaps = 3/132 (2%)
 Frame = -2

Query: 440  STIKVSPFGVNGAEYTT**LSSISLIAKNACSLSPHSHFAVFTVCST--SAKDFISTAAN 267
            S+I   P   + + Y++  + S S +  ++ SL   S     +  S   S+   +ST + 
Sbjct: 652  SSISTIPISSSLSTYSSSVIPSSSTLVSSSSSLIVSSSPVASSSSSPIPSSSSLVSTYSA 711

Query: 266  RASEFLSDSC-LIEINGTLVLPSQVQWTSLTLVTVNQSQPVPSSVMLGDMPMETALPRNL 90
              S     S  L  ++ +  +P+ V   S TL+T + S  + SS+      + +    N+
Sbjct: 712  SLSNITHSSLSLTAMSSSSAIPTSVN--SSTLITASSSNTLLSSITSSSAIVSSTTVSNI 769

Query: 89   SISA*ATTKSAE 54
            S +  + T S++
Sbjct: 770  SSNLPSATASSQ 781



 Score = 25.8 bits (54), Expect = 3.5
 Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
 Frame = -2

Query: 332 SHFAVFTVCSTSAKDFISTAANRASEFLSDSCLIEINGTLVLPSQVQWTSLTLVTVNQSQ 153
           S  ++ +  S+     IST    +S     S +I  + TLV  S     S + V  + S 
Sbjct: 638 SSSSIISGSSSILSSSISTIPISSSLSTYSSSVIPSSSTLVSSSSSLIVSSSPVASSSSS 697

Query: 152 PVP-SSVMLGDMPMETALPRNLSISA*ATTKSAEIITNFN 36
           P+P SS ++       +   + S+S  A + S+ I T+ N
Sbjct: 698 PIPSSSSLVSTYSASLSNITHSSLSLTAMSSSSAIPTSVN 737


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 198 GAMDFAYLGNGKPVTTS 148
           GA    YLGNGKP+  S
Sbjct: 113 GAKQSKYLGNGKPIEAS 129


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 107 PSPSAYLLTSRNLVLVVT 160
           PSP   +LT +NL LV+T
Sbjct: 834 PSPRQLVLTKKNLYLVIT 851


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,919,185
Number of Sequences: 5004
Number of extensions: 36412
Number of successful extensions: 84
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)