Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_M23
(492 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2391| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89) 33 0.097
SB_52639| Best HMM Match : 7tm_1 (HMM E-Value=0) 29 1.6
SB_43870| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 29 2.8
SB_59385| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_52196| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_7912| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_7844| Best HMM Match : RasGEF (HMM E-Value=0.00058) 27 8.4
>SB_2391| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 282
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/63 (26%), Positives = 32/63 (50%)
Frame = +1
Query: 280 EIKSFAEVEQTVKTAKCECGDKEHAFLAIKEIDDNYYVVYSAPFTPNGLTLIVLNARTIP 459
++ F ++ +K K C K HA E+ ++ + Y FTPN +++++ TIP
Sbjct: 192 DVHRFEKISNIIKQFKLSCS-KLHAHFQSMEVKNSGFAAYIDVFTPNTYVMVIMSDTTIP 250
Query: 460 TQA 468
+ A
Sbjct: 251 SAA 253
>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
Length = 1494
Score = 33.5 bits (73), Expect = 0.097
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Frame = -2
Query: 344 LSPHSHFAVFTVCSTSAKDFISTAANRASEFLSDSCL-IEINGTLVLPSQVQWTSLTLVT 168
L+ S +VF S+S DF+ T+++ S FL+ S L + + LPS +S +L
Sbjct: 568 LTSSSSLSVFLTSSSSLSDFL-TSSSSLSVFLTSSSLPSDFLTSSSLPSDFLTSSSSLSV 626
Query: 167 VNQSQPVPSSVMLGDMPMETALPRNLSISA*ATTKS 60
S +PS + + L + S+S T+ S
Sbjct: 627 FPTSSSLPSDFLTSSSSLSDFLTSSSSLSVFPTSSS 662
Score = 29.9 bits (64), Expect = 1.2
Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Frame = -2
Query: 380 SSISLIAKNACSLSPH----SHFAVFTVCSTSAKDFISTAANRASEFLSDSCLIEINGTL 213
SS+S+ ++ SLS S + F S+S DF++++++ + S S + +
Sbjct: 817 SSLSVFLTSSSSLSDFLTSSSSLSDFLTSSSSLSDFLTSSSSLSVFPTSSSLPSDFLTSS 876
Query: 212 VLPSQVQWTSLTLVTVNQSQPVPSSVMLGDMPMETALPRNLSISA*ATTKS 60
LPS +S +L S +PS + + L + S+S T+ S
Sbjct: 877 SLPSDFLTSSSSLSVFPTSSSLPSDFLTSSSSLSDFLTSSSSLSVFPTSSS 927
>SB_52639| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 359
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -1
Query: 351 VLFVTAFTFRCFHRLFYFCEGFYFHGCESCIRILI*FLFNRN*RD 217
++F + TF CF + FYF F H S I + FN N R+
Sbjct: 267 IMFFSPQTFPCFSKPFYFVSLFLGHS-NSAINPFLYSFFNANFRE 310
>SB_43870| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 869
Score = 28.7 bits (61), Expect = 2.8
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Frame = +1
Query: 115 IGISPNITELGTGCDWFTVTKVSEVHCTCDGRTNVPLISIKQE--SDKNSDAR----FAA 276
I I+P I ++ T FTV + +E+ CTC I K SD+NS R + A
Sbjct: 123 IRIAPQIIDITTNFT-FTVGQTAELMCTCYFNALDDTIEFKWHAISDRNSVCRNPFSYNA 181
Query: 277 VEIKSFAEVEQTVKTAKCECGD 342
V +KS + + V GD
Sbjct: 182 VVVKSDDDNDDGVSDVDDASGD 203
>SB_59385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1038
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -1
Query: 354 CVLFVTAFTFRCFHRLFYFCEGFYFHGCESC 262
C F T T +CFHR + F G ++C
Sbjct: 917 CQYFTTETTCKCFHRSELRQVSYIFRGAKNC 947
>SB_52196| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 27.5 bits (58), Expect = 6.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 277 VEIKSFAEVEQTVKTAKCECGDKEH 351
VE+ ++A+ EQ KC C K+H
Sbjct: 266 VEVHTYADDEQDCCQGKCNCSHKKH 290
>SB_7912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1020
Score = 27.5 bits (58), Expect = 6.4
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = -2
Query: 329 HFAVFTVCSTSAKDFISTAANRASEFLSDSCLIEINGTLVLPSQVQWTSLTLVTVNQSQP 150
H V +C S S AN+ + + L+E + ++V W LT ++ SQ
Sbjct: 171 HHLVDALCQLSTTSMESAQANKEPSLFAVAKLLETGLNNLHRARVLWKPLTAHLLDVSQV 230
Query: 149 VPSSVML 129
V S ++L
Sbjct: 231 VYSIMLL 237
>SB_7844| Best HMM Match : RasGEF (HMM E-Value=0.00058)
Length = 1299
Score = 27.1 bits (57), Expect = 8.4
Identities = 24/127 (18%), Positives = 51/127 (40%), Gaps = 3/127 (2%)
Frame = +1
Query: 121 ISPNITELGTGCDWFTVTKVSEVHCTCDGRTNVPLISIKQESDKNSDARFAAVEIKSFAE 300
++ + +++ T D S+V T D + SD +A++I + +
Sbjct: 578 VTLSASDVPTTSDDQVTLSASDVPTTSDDPVTPSASDVTPTSDDQVTP--SAIDIPTAKD 635
Query: 301 VEQTVKTAKCECGDKEHAFLAIKEI---DDNYYVVYSAPFTPNGLTLIVLNARTIPTQAD 471
+ T+ + L+ ++ D+ + ++ TP + L+ R IPT++D
Sbjct: 636 DKVTLSAMNVPTAKDDKVTLSASDVPTTSDDQVTLSASDVTPTSDNQVTLSPRDIPTKSD 695
Query: 472 LDKTVSG 492
T SG
Sbjct: 696 DQVTPSG 702
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,412,826
Number of Sequences: 59808
Number of extensions: 276145
Number of successful extensions: 665
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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