Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_M22
         (281 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0020 - 16504322-16504654,16504758-16504785,16504937-165049...    33   0.045
08_01_0533 + 4625376-4625709,4625799-4625966,4627428-4627689,462...    28   1.3  
09_04_0042 - 14055885-14056142,14057508-14057774,14057859-140592...    25   6.8  
06_01_0956 + 7374273-7374356,7374502-7374963,7375043-7375673,737...    25   9.0  
06_01_0272 + 2016836-2017963                                           25   9.0  
01_06_0537 + 30073020-30074471,30074957-30074980                       25   9.0  
01_06_0203 - 27487469-27489787                                         25   9.0  

>03_04_0020 -
           16504322-16504654,16504758-16504785,16504937-16504989,
           16505377-16505463,16505636-16505704,16506071-16506145,
           16507040-16507210,16507693-16507793,16508062-16508139,
           16508492-16508648,16508737-16509006,16509369-16509485,
           16510250-16510339,16510417-16510629,16510742-16510891,
           16511929-16512342
          Length = 801

 Score = 32.7 bits (71), Expect = 0.045
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 2   LKEAMYTILNELNPGDYFSIIDL-ESIITVHELSEADKEKT 121
           +K AMYT L+EL  GDYF+II   + + +     E   EKT
Sbjct: 352 VKNAMYTTLSELVQGDYFNIITFNDELHSFSSCLEQVNEKT 392


>08_01_0533 +
           4625376-4625709,4625799-4625966,4627428-4627689,
           4627787-4627934,4628453-4628496,4628812-4628859,
           4629245-4630509,4630741-4630839,4630916-4631097,
           4631186-4631246,4631488-4631725,4631818-4631971,
           4632042-4632335
          Length = 1098

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -3

Query: 132 YLYLVFSLSASDSSWTVIIDS--KSMMLK*SPGFSSFNIVYIAS 7
           Y YL+ S S S +S   ++DS  K   L   PG S + + YI S
Sbjct: 34  YSYLMISTSYSSTSVRFVLDSSGKVQFLSWDPGHSLWAVQYILS 77


>09_04_0042 -
           14055885-14056142,14057508-14057774,14057859-14059292,
           14059378-14059539,14059642-14059768,14059869-14060200,
           14060289-14061083,14061379-14061714,14061791-14062730,
           14063338-14063588
          Length = 1633

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -1

Query: 203 QYSPVWLDTVQLNPTLVEFRCNKS 132
           QYSP+   +V L P++++F C+ +
Sbjct: 894 QYSPMVTLSVNLPPSMLDFNCHST 917


>06_01_0956 +
           7374273-7374356,7374502-7374963,7375043-7375673,
           7375806-7375875,7376208-7376508
          Length = 515

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -2

Query: 223 DDNFSLLNI--LRCGLIRCN*IQLWLNFVVI 137
           DD F L  I  L  GL++C  +Q W+  V++
Sbjct: 395 DDLFDLFRIRKLDTGLLKCYSLQHWILLVIV 425


>06_01_0272 + 2016836-2017963
          Length = 375

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 8   EAMYTILNELNPGDYFSIIDLESIITVHELSEA 106
           EAM+ +L +  PGDY  ++  E   TV E  +A
Sbjct: 265 EAMWRMLQQDKPGDY--VVATEESHTVEEFLQA 295


>01_06_0537 + 30073020-30074471,30074957-30074980
          Length = 491

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 179 YQATPENIEKAKIIISSRFFVHLIRLINKVDV 274
           YQA+ E++    ++++S   V  ++L  KVDV
Sbjct: 435 YQASSEDLNDQPMVLASDVLVGNVQLQGKVDV 466


>01_06_0203 - 27487469-27489787
          Length = 772

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 120 VFSLSASDSSWTV 82
           ++SL ASD SWTV
Sbjct: 256 IYSLDASDGSWTV 268


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,906,342
Number of Sequences: 37544
Number of extensions: 94648
Number of successful extensions: 204
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 279801164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)