Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_M22
         (281 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48320.1 68418.m05969 DC1 domain-containing protein contains ...    29   0.48 
At4g18700.1 68417.m02765 CBL-interacting protein kinase 12 (CIPK...    29   0.63 
At5g65950.1 68418.m08302 expressed protein                             27   1.9  
At1g33420.1 68414.m04137 PHD finger family protein contains Pfam...    26   4.5  
At5g65710.1 68418.m08270 leucine-rich repeat transmembrane prote...    25   5.9  
At5g62390.1 68418.m07830 calmodulin-binding family protein conta...    25   5.9  
At2g07773.1 68415.m00889 hypothetical protein                          25   5.9  

>At5g48320.1 68418.m05969 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 977

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +2

Query: 38  NPGDYFSIIDLESIITVHELSEADKEKTRYKYFYYNEIQPKLDLVAPYQATPE 196
           N G Y +I  LE  + +  L E D     Y Y   +E+   LD+    +A P+
Sbjct: 309 NSGTYSNIEHLEMDLNIEHL-EMDSNSDTYVYIKLSELDSDLDIEFDLEADPD 360


>At4g18700.1 68417.m02765 CBL-interacting protein kinase 12 (CIPK12)
           identical to CBL-interacting protein kinase 12
           [Arabidopsis thaliana] gi|13249123|gb|AAK16687; contains
           Pfam profiles PF00069: Protein kinase domain and
           PF03822: NAF domain; identical to cDNA CBL-interacting
           protein kinase 12 (CIPK12) GI:13249122
          Length = 489

 Score = 28.7 bits (61), Expect = 0.63
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 59  IIDLESIITVHELSEADKEKTRYKYFYYNEIQPKL 163
           I +L   + V E+ +   +KT Y+ F  NE++PKL
Sbjct: 418 IFELTPSLVVVEVKKKGGDKTEYEDFCNNELKPKL 452


>At5g65950.1 68418.m08302 expressed protein
          Length = 865

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 14/57 (24%), Positives = 28/57 (49%)
 Frame = +2

Query: 44  GDYFSIIDLESIITVHELSEADKEKTRYKYFYYNEIQPKLDLVAPYQATPENIEKAK 214
           G +  +++    IT+H ++  D+E TRY       +Q  L ++A  + + E+    K
Sbjct: 86  GQFAQLLEKGEAITLHSIT--DEEYTRYTISEAKRVQDSLQIIAWLKRSYESFTNLK 140


>At1g33420.1 68414.m04137 PHD finger family protein contains Pfam
           profile: PF00628: PHD-finger
          Length = 697

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 10/95 (10%)
 Frame = +2

Query: 23  ILNELNPGDYFSIIDLESIITVHELSEADKE-------KTRYKYFYYNEIQPKLDLVAPY 181
           + +  NPG       LES+  VH LS  D         K   +Y Y   + P+       
Sbjct: 407 VSSRCNPGSNDFEYRLESVNNVHRLSNQDVNNASVEHVKQDLRYLYETLLHPQTMAEFRS 466

Query: 182 QATPEN-IEKAKIIISSRFFV--HLIRLINKVDVS 277
           +AT E  I+ A  I+  + F+  +L   +N V ++
Sbjct: 467 RATREKMIDAATKILDCKHFIKDYLSSTVNPVAIN 501


>At5g65710.1 68418.m08270 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 993

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 182 DTVQLNPTLVEFRCNKSIYTLFFPYRL 102
           D V LNP LVEF+   + +T   P  L
Sbjct: 333 DVVALNPNLVEFKIFNNSFTGTLPRNL 359


>At5g62390.1 68418.m07830 calmodulin-binding family protein contains
           IQ calmodulin-binding motif, Pfam:PF00612
          Length = 446

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 158 KLDLVAPYQATPENIEKAKIIISSRFFV 241
           +LDL+ PY  TP  + +  I+  S  F+
Sbjct: 6   RLDLIDPYTCTPLIVRETSIVEPSSLFL 33


>At2g07773.1 68415.m00889 hypothetical protein
          Length = 273

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 77  IITVHELSEADKEKTRYKYFY 139
           ++T HE+ + D+ K R+ Y Y
Sbjct: 223 VMTEHEMIDIDRRKKRFYYLY 243


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,118,951
Number of Sequences: 28952
Number of extensions: 86781
Number of successful extensions: 206
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 241748928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)