Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_M21
(535 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.26
SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11) 32 0.34
SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.59
SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22) 29 2.4
SB_43460| Best HMM Match : Keratin_B2 (HMM E-Value=0.68) 29 3.2
SB_7240| Best HMM Match : OMPdecase (HMM E-Value=0) 28 5.5
SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41) 27 7.3
SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37) 27 9.6
SB_20479| Best HMM Match : Collagen (HMM E-Value=1) 27 9.6
>SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 32.3 bits (70), Expect = 0.26
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +2
Query: 266 ALDFYQTALRDPAFYQLYNRIVGYINAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFD 445
AL + ALR P ++Y + ++ FK LK YP H + + L+ + D
Sbjct: 180 ALRYVLDALRKPYGSKMYMFGIAALDRFKTRLKDYPHYCQHLASIPHFKEFPQSLIEYID 239
Query: 446 YSQ 454
Y Q
Sbjct: 240 YGQ 242
>SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)
Length = 129
Score = 31.9 bits (69), Expect = 0.34
Identities = 25/97 (25%), Positives = 42/97 (43%)
Frame = +3
Query: 228 HLNHSTSTPSCPVRLTFTKPHFETLHSISYITGLWVTLTHSSIT*SLILKRNFISSALKS 407
+L HST T S L T T +++++T + TLTH +IT S I L
Sbjct: 26 NLTHSTLTHSNLTHLNLTHSTL-TYSTLTHLTLTYSTLTHLTITYSTITHSTLTHLTLTH 84
Query: 408 MMLSLRN*SHSLTIANLMPLTVYS*PKKRLRLVTHTT 518
+ L+ +HS + + + + +TH+T
Sbjct: 85 LTLTYSTLTHSTLTHSTLTHSTLTHSTLTHSTITHST 121
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +3
Query: 306 SISYITGLWVTLTHSSIT*SLILKRNFISSALKSMMLSLRN*SHS-LTIANLMPLTV 473
++++ T + +TLTHS++T + N S L L+ N +HS LT + L LT+
Sbjct: 1 TLTHPTLIHLTLTHSNLTHLTLTHSNLTHSTLTHSNLTHLNLTHSTLTYSTLTHLTL 57
Score = 29.1 bits (62), Expect = 2.4
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Frame = +3
Query: 195 MKLSLAMCSVQHLNHSTSTPSCPVRLTFTKP---HFETLH-SISYITGLWVTLTHSSIT* 362
+ L+ + + L H T T S LT T H H +++++T + TLTHS++T
Sbjct: 40 LNLTHSTLTYSTLTHLTLTYSTLTHLTITYSTITHSTLTHLTLTHLTLTYSTLTHSTLTH 99
Query: 363 SLILKRNFISSALKSMMLSLRN*SHS 440
S + S L ++ +HS
Sbjct: 100 STLTHSTLTHSTLTHSTITHSTLTHS 125
Score = 29.1 bits (62), Expect = 2.4
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = +3
Query: 192 LMKLSLAMCSVQHLN--HSTSTPSCPVRLTFTKPHFETLHSISYITGLWVTLTHSSIT*S 365
L L+L ++ HL +ST T S LT T H +++Y T TLTHS++T S
Sbjct: 52 LTHLTLTYSTLTHLTITYSTITHSTLTHLTLT--HL----TLTYSTLTHSTLTHSTLTHS 105
Query: 366 LILKRNFISSALKSMMLSLRN*SH 437
+ S + L+ N +H
Sbjct: 106 TLTHSTLTHSTITHSTLTHSNLTH 129
>SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1548
Score = 31.1 bits (67), Expect = 0.59
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +3
Query: 207 LAMCSVQHLNHSTSTPSCPVRLTFTKPHFET 299
L+ CS+Q L +T T P+R++F++PH T
Sbjct: 1421 LSTCSLQSLTDNT-TSERPIRISFSEPHLHT 1450
>SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)
Length = 2269
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 7/51 (13%)
Frame = +2
Query: 56 LQKGKFE-----SYGKKIDFHDEKAINFVGNYWQENADL--YEEEVTKDYQ 187
L+KGKF+ S K ID E+ F+G+ W ++ DL +++E K+ Q
Sbjct: 1093 LEKGKFQVKQWCSNSKTIDKSCERYCTFLGHKWDKDRDLLTFKKEKIKETQ 1143
>SB_43460| Best HMM Match : Keratin_B2 (HMM E-Value=0.68)
Length = 306
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 218 LGAAPKPFDKHTFMPSALDFYQTALRDPAFYQLYNRIVGYINAF 349
+G + + F+P+ L F T+ D FY NR +G IN++
Sbjct: 1 MGVTLRRAKEKRFIPADLSFGITSFYDVYFYSPRNRSLGIINSY 44
>SB_7240| Best HMM Match : OMPdecase (HMM E-Value=0)
Length = 474
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 383 LHFVGVKINDVVVEKLVTFFDYSQFDATNSV 475
LH G K++D VVE + F + +QF AT+ V
Sbjct: 181 LHAQG-KVDDAVVESVREFLEANQFKATSDV 210
>SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41)
Length = 1069
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 71 FESYGKKIDFHDEKAINFVGNYWQENADLYEEEVTKDYQRSYEIVAR 211
FE Y ++ DEKA ++ Y ++ A + E +RSY + +
Sbjct: 138 FEIYVSLNEWQDEKAGQYLAVYLKDEAKAFYHEQEDSVRRSYRALCK 184
>SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37)
Length = 1632
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +3
Query: 36 KRLSYSPYRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAM 215
K + YS K ++ AR S ++ + + + KR KKK++R N MKL+ +
Sbjct: 893 KFVDYSEKAKLRASAQARNSRSPVEVAIEEEKRVAKRKKEQRKKKVRRRKNAAMKLANKL 952
Query: 216 CS 221
S
Sbjct: 953 VS 954
>SB_20479| Best HMM Match : Collagen (HMM E-Value=1)
Length = 1214
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +2
Query: 53 SLQKGKFESYGKKIDFHDEKAINFVGNYWQENADLYEEEVTKDYQR 190
+LQ+G S K+++ A+ G+ Q++ ++ E E +DYQR
Sbjct: 499 NLQRGYIASNQDKLEWKVFFAMGKTGDNSQDSRNIREAEEQRDYQR 544
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,246,605
Number of Sequences: 59808
Number of extensions: 328001
Number of successful extensions: 995
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -