Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_M20
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    29   0.34 
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      28   1.0  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    27   1.8  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   4.2  
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |...    25   5.6  
SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po...    25   7.3  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   7.3  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   7.3  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    25   7.3  
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc...    25   9.7  
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa...    25   9.7  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   9.7  

>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = -3

Query: 401 DDEHLERQTAEGSER*QKPVRKAKATLIPPTLDALE----TCSSCVETFFQYVFSPRSLF 234
           +DEHL  Q +   E  ++P+    +T  P   DA      + SS  +   Q  FSPRS  
Sbjct: 447 EDEHLNLQGSFIEESTKQPISSKPSTSSPDMTDAATGGRVSSSSFRDKILQTNFSPRSTI 506

Query: 233 DNAVHLER 210
           D+  ++ +
Sbjct: 507 DSFSNISK 514


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 19/60 (31%), Positives = 32/60 (53%)
 Frame = +3

Query: 129 NDKRLDMLEIDSFVYKLDTGKNNIVRSSLEMHGVIEQRPWTKNILEKGFDTTGTGFKSIE 308
           N K L+ + + SFV      K+N +++S E+  +IE+  + KN++   F     G KS E
Sbjct: 754 NYKSLESIGLTSFV------KDNKLKASKELQKLIEENVFPKNLILFIFRKCVIGIKSFE 807


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 252 KNILEKGFDTTGTGFKSIESWWYKSRLG 335
           KNI +  F+TTG G K +E   YK   G
Sbjct: 106 KNIPKMKFNTTGFGAKMLEKMGYKQGQG 133


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 67   TQSFVYLLVPNTIAWAAS*ASMTNALTCSKSIASSINSTL 186
            TQS  Y    +T+ W+ S    T+    S+ +++  NST+
Sbjct: 3866 TQSVYYNATSSTVPWSNSTFRNTSNTMTSRFVSNDFNSTI 3905


>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/52 (23%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = -3

Query: 260 YVFSPRSLFDNAVHLERAADDVVLTSVEFIDEAIDF--EHVKAFVIDAHEAA 111
           +V   +  +D+++H  R   D++L   E ID A+ F  +H++  + + ++ +
Sbjct: 152 FVTLSKPAYDSSIHPTRENADIILPQKENIDTALLFVSQHLQDILAEMNKTS 203


>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 4   CGVLITSLSRCLSMLCQIRLLTQSFVYLLVPNTIAWAA 117
           CG++  SL         +RLL  + VY      IAWA+
Sbjct: 203 CGLIANSLFN--DTFSSLRLLDDNSVYTFSTKNIAWAS 238


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -3

Query: 125  AHEAAHAIVFGTNKYTNDCVNSLI*HNIDRHLERL 21
            A E  +A   G NKY N+ V SLI  N   H   L
Sbjct: 1147 ATEIHYAASVGQNKYLNEYVASLIRTNEKTHSTEL 1181


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 314 PTLDALETCSSCVETFFQYVFSPRSLFDNAVHLER 210
           P+LD  ETCS+ V       FSP ++  N   + R
Sbjct: 27  PSLDYFETCSNFVPRAGIPTFSPYAVIKNFDEVNR 61


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = -1

Query: 526 SLSKG-NPRGIVSK-HTLHRQAYLAFIVDISIDGK-TIPVLTGV 404
           +L +G +P+ +  K H LH++ Y  F +D    G+ T P  TG+
Sbjct: 280 ALEEGVSPKELCDKYHALHKEVYDWFEIDFDHFGRTTTPKQTGI 323


>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
           Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 227

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 228 VIEQRPWTKNILEKGFDTTGTGFKSIESWWYKSRLGFP 341
           +++ +P T+NILE  +  TG      E   Y   L FP
Sbjct: 24  LVDAKPATENILEWHYIITGPPDTPYEGGQYHGTLIFP 61


>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
           exchanger|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 412

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 265 SNMFLVHGLCSITPCISSELRT 200
           SN+ LV G+C +T  I  E+ T
Sbjct: 154 SNLLLVFGMCLVTTGIRREITT 175


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 20/64 (31%), Positives = 30/64 (46%)
 Frame = +1

Query: 106 AWAAS*ASMTNALTCSKSIASSINSTLVRTTSSAARSRCTALSNRDRGLKTYWKKVSTQL 285
           A ++S A  T+  + +   ASS N+ L   TSS+A    T +SN    L +      +QL
Sbjct: 725 AMSSSSAIPTSVNSSTLITASSSNTLLSSITSSSAIVSSTTVSNISSNLPSATASSQSQL 784

Query: 286 EQVS 297
              S
Sbjct: 785 TNSS 788


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,247,430
Number of Sequences: 5004
Number of extensions: 44576
Number of successful extensions: 158
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)