Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_M18
         (497 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    28   0.90 
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase...    25   6.3  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    25   8.4  

>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 27.9 bits (59), Expect = 0.90
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 312 RSYMRRYEAPCCIRFLGC 365
           R Y+R +  PC +RF+ C
Sbjct: 61  RDYLREFPRPCILRFIAC 78


>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 283 FSQYITVYNISLINLSHKS 227
           FSQY  V +ISL+ +SH +
Sbjct: 148 FSQYTVVADISLVAISHSA 166


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = +3

Query: 309 YRSYMRRYEAPCCIRFLGCGAFSFFPRYVGRCIP 410
           +  Y+  Y  PC      C   S  P+Y G+  P
Sbjct: 113 FHQYLAEYGYPCIRDEKSCVTISPIPKYYGKVDP 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,955,798
Number of Sequences: 5004
Number of extensions: 36683
Number of successful extensions: 69
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)