Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_M18
         (497 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-85...    28   3.6  
12_02_0269 - 16617292-16618852,16622763-16623562                       27   8.4  

>11_01_0110 +
           850780-850805,851465-851537,851558-851720,851947-852260,
           852330-852409,852506-852848,853068-853166,853240-853360,
           853567-853723,853976-854099,855275-855368,855866-857259,
           857882-857924,858240-858458,859379-859605,859701-859948,
           860246-860552,860725-861153
          Length = 1486

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 427 SIQLQNGIHLPTYLGKKENAPHPKN 353
           SIQ+   + LP YL    +APHP++
Sbjct: 37  SIQMPQKVPLPCYLQSPPSAPHPRH 61


>12_02_0269 - 16617292-16618852,16622763-16623562
          Length = 786

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -3

Query: 447 INTRHDYL-FNFKMGYTCRRTLGKKKMRHTLKILYNMAPHNV-ACKIY 310
           +N   ++L   + MG+   R    K M+H LK+ YN    ++  C +Y
Sbjct: 381 VNKLDNWLKIKYSMGFELERNPNSKWMKHILKLSYNNLSSDLKTCFLY 428


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,335,692
Number of Sequences: 37544
Number of extensions: 193902
Number of successful extensions: 284
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)