Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_M18
         (497 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29370| Best HMM Match : fn3 (HMM E-Value=0)                         27   6.5  
SB_17397| Best HMM Match : RepA_N (HMM E-Value=3.8)                    27   8.6  

>SB_29370| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 579

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -1

Query: 428 IYSTSKWDTPADVPWEKRKCATP*KSYTTWRLITSHVRSILSHI 297
           +Y+ +  D PA  P+     A   +S+        HVR++L H+
Sbjct: 457 VYAMTDEDVPAVAPYRVEGVAISARSFRLQWKFNDHVRNVLGHL 500


>SB_17397| Best HMM Match : RepA_N (HMM E-Value=3.8)
          Length = 104

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +2

Query: 335 GAMLYKIFRVWRIFFFPKVRRQVYPILKLNR*SCLVLIQF 454
           GAM  K +RV+RIF   ++++++ PI   NR  CL L  F
Sbjct: 15  GAMFAKTYRVYRIFTNNELKKELGPI--SNR--CLALRLF 50


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,064,889
Number of Sequences: 59808
Number of extensions: 260736
Number of successful extensions: 469
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)