Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_M18
         (497 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038623-2|AAB94158.1|  342|Caenorhabditis elegans Seven tm rece...    28   4.3  
Z75533-6|CAA99819.1|  378|Caenorhabditis elegans Hypothetical pr...    27   5.7  

>AF038623-2|AAB94158.1|  342|Caenorhabditis elegans Seven tm
           receptor protein 166 protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 231 RVSNNTRLLLQCFNIAICIVEN 166
           R+SNN  LLLQC ++   IV N
Sbjct: 2   RISNNLNLLLQCSSLICAIVFN 23


>Z75533-6|CAA99819.1|  378|Caenorhabditis elegans Hypothetical
           protein C54G4.7 protein.
          Length = 378

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 309 YRSYMRRYEAPCCIRFLGCGAFSFFPRY 392
           +R+Y+ +   P CI   G G  S+F R+
Sbjct: 105 FRAYLPQKPGPVCIHLAGTGDHSYFRRH 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,611,394
Number of Sequences: 27780
Number of extensions: 198617
Number of successful extensions: 310
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)