Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_M18
         (497 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64910.1 68418.m08165 expressed protein  ; expression support...    30   1.00 
At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal hydrolase-r...    28   4.0  
At1g52430.1 68414.m05919 ubiquitin carboxyl-terminal hydrolase-r...    28   4.0  
At5g65700.1 68418.m08269 leucine-rich repeat transmembrane prote...    27   5.3  
At2g23250.1 68415.m02777 UDP-glucoronosyl/UDP-glucosyl transfera...    27   5.3  
At2g01730.1 68415.m00101 metallo-beta-lactamase family protein s...    27   9.3  
At1g01220.1 68414.m00036 GHMP kinase-related contains similarity...    27   9.3  

>At5g64910.1 68418.m08165 expressed protein  ; expression supported
           by MPSS
          Length = 487

 Score = 29.9 bits (64), Expect = 1.00
 Identities = 18/68 (26%), Positives = 30/68 (44%)
 Frame = -1

Query: 449 GSIRGMIIYSTSKWDTPADVPWEKRKCATP*KSYTTWRLITSHVRSILSHIEIT*IQSIH 270
           G +  +I   T K      +P E+R      K++  + L  +  RS L H+    ++  +
Sbjct: 276 GEVGEIIAMKTMKMAWVPYIPLEQRDRQVDNKNFPIFILGCTQRRSALKHLPDDRVKKFN 335

Query: 269 YCL*YFTN 246
           YCL Y  N
Sbjct: 336 YCLPYINN 343


>At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal
            hydrolase-related contains Pfam profiles PF00443:
            Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
            of unknown function (DUF629), PF04781: Protein of unknown
            function (DUF627)
          Length = 1136

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 330  YEAPCCIRFLGCGAFSFFPRYVGRCIP 410
            Y+  C I+  GCG  +F   ++ RC P
Sbjct: 974  YQKSCDIKTGGCGESNFVHHFISRCPP 1000


>At1g52430.1 68414.m05919 ubiquitin carboxyl-terminal
            hydrolase-related contains Pfam profiles PF00443:
            Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
            of unknown function (DUF629), PF04781: Protein of unknown
            function (DUF627)
          Length = 1136

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 330  YEAPCCIRFLGCGAFSFFPRYVGRCIP 410
            Y+  C I+  GCG  +F   ++ RC P
Sbjct: 974  YQKSCNIKTGGCGESNFVHHFISRCPP 1000


>At5g65700.1 68418.m08269 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 1003

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +1

Query: 295 SMCDSIDLTCDVMRRHV 345
           S C  I +TCDV RRHV
Sbjct: 55  SFCTWIGVTCDVSRRHV 71


>At2g23250.1 68415.m02777 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains similarity to
           glucosyltransferases
          Length = 438

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 330 YEAPCCIRFL-GCGAFSFFPRYVGRCIPF 413
           +  PC I ++  CGAFS + RY  +  PF
Sbjct: 110 HNIPCAILWIQACGAFSVYYRYYMKTNPF 138


>At2g01730.1 68415.m00101 metallo-beta-lactamase family protein
           simliar to SP|P79101 Cleavage and polyadenylation
           specificity factor, 73 kDa subunit (CPSF 73 kDa subunit)
           {Bos taurus}; contains Pfam profile PF00753:
           Metallo-beta-lactamase superfamily
          Length = 613

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -3

Query: 408 GYTCRRTLGKKKM--RHTLKILYNMAPHNVACKIYTIAH*NHINS 280
           GY+   T+G K M  + T   LYN    +V CK++ +A   H ++
Sbjct: 351 GYSVAGTVGHKLMAGKPTTVDLYNGTKVDVRCKVHQVAFSPHTDA 395


>At1g01220.1 68414.m00036 GHMP kinase-related contains similarity to
           L-fucose kinase [Homo sapiens] gi|21212956|emb|CAD29647
          Length = 1055

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 450 WINTRHDYLFNFKMGYTCRRTLGKKKM 370
           W+ +RHD+L    +G     +LG++KM
Sbjct: 317 WVPSRHDWLRTRPLGELLVNSLGRQKM 343


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,676,811
Number of Sequences: 28952
Number of extensions: 172152
Number of successful extensions: 292
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)