Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_M17
(550 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 213 7e-56
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 211 3e-55
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 210 3e-55
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 206 1e-53
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 181 3e-46
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 101 2e-22
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 101 2e-22
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 96 2e-20
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 96 2e-20
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 95 3e-20
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 89 1e-18
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 89 1e-18
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 89 2e-18
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 89 2e-18
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 89 2e-18
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 89 2e-18
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 89 2e-18
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 86 2e-17
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 83 2e-16
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 83 2e-16
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 80 1e-15
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 79 1e-15
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 79 1e-15
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 77 6e-15
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 76 1e-14
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 75 3e-14
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 74 5e-14
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 74 5e-14
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 72 3e-13
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 71 7e-13
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 71 7e-13
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 69 2e-12
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 69 3e-12
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 66 2e-11
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 65 3e-11
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 65 3e-11
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 64 4e-11
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 63 1e-10
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 59 2e-09
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 59 2e-09
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 56 2e-08
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 56 2e-08
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 56 2e-08
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 55 3e-08
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 55 4e-08
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 54 6e-08
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 53 1e-07
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 52 2e-07
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 52 2e-07
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 52 2e-07
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 52 3e-07
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 51 6e-07
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 51 6e-07
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 50 8e-07
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 50 8e-07
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 50 1e-06
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 50 1e-06
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 48 5e-06
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 48 5e-06
At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative EUKARY... 48 5e-06
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 46 1e-05
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 46 2e-05
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 45 3e-05
At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly ... 45 3e-05
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 45 4e-05
At1g60930.1 68414.m06858 DNA helicase, putative strong similarit... 44 9e-05
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 43 2e-04
At4g37020.1 68417.m05244 expressed protein 42 3e-04
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 42 3e-04
At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila... 41 6e-04
At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative simila... 40 0.001
At1g12700.1 68414.m01473 helicase domain-containing protein / pe... 39 0.003
At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative 38 0.003
At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli... 35 0.031
At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low si... 34 0.054
At5g01710.1 68418.m00088 expressed protein 33 0.13
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ... 33 0.13
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 32 0.22
At3g43920.1 68416.m04701 ribonuclease III family protein similar... 32 0.29
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 32 0.29
At4g32700.1 68417.m04655 DNA-directed DNA polymerase family prot... 30 0.89
At1g03950.1 68414.m00380 SNF7 family protein contains Pfam domai... 30 0.89
At3g24340.1 68416.m03056 SNF2 domain-containing protein / helica... 30 1.2
At4g34580.1 68417.m04913 SEC14 cytosolic factor, putative / phos... 28 3.6
At1g19394.1 68414.m02414 expressed protein 28 3.6
At1g05480.1 68414.m00557 SNF2 domain-containing protein / helica... 28 4.7
At4g01020.1 68417.m00137 helicase domain-containing protein / IB... 27 6.2
At5g57360.1 68418.m07166 F-box family protein / LOV kelch protei... 27 8.3
At4g19870.2 68417.m02913 kelch repeat-containing F-box family pr... 27 8.3
At4g19870.1 68417.m02912 kelch repeat-containing F-box family pr... 27 8.3
At4g14570.1 68417.m02243 acylaminoacyl-peptidase-related similar... 27 8.3
At2g41800.1 68415.m05166 expressed protein contains Pfam profile... 27 8.3
At2g02040.1 68415.m00139 peptide transporter (PTR2-B) / oligopep... 27 8.3
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 213 bits (520), Expect = 7e-56
Identities = 101/155 (65%), Positives = 116/155 (74%)
Frame = +1
Query: 1 LEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHERDFTVSAM 180
LEGIKQFY+ +E EEWKLETLCDLY+TL+I Q+VIF NTRRKVDWLT+ M RD TVSA
Sbjct: 249 LEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSAT 308
Query: 181 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENYXXXXXX 360
HGDMDQ R++IMR+FR+GSSRVLITTDLLARGIDVQQVS VIN+DLPT ENY
Sbjct: 309 HGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGR 368
Query: 361 XXXXXXXXXXXNFVTEADRRALKDIEEFYHTSISE 465
NFVT D R L DI++FY+ + E
Sbjct: 369 SGRFGRKGVAINFVTRDDERMLFDIQKFYNVVVEE 403
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 211 bits (515), Expect = 3e-55
Identities = 100/155 (64%), Positives = 117/155 (75%)
Frame = +1
Query: 1 LEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHERDFTVSAM 180
LEGIKQFY+ +E E+WKLETLCDLY+TL+I Q+VIF NTRRKVDWLT+ M RD TVSA
Sbjct: 249 LEGIKQFYVNVEKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSAT 308
Query: 181 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENYXXXXXX 360
HGDMDQ R++IMR+FR+GSSRVLITTDLLARGIDVQQVS VIN+DLPT ENY
Sbjct: 309 HGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGR 368
Query: 361 XXXXXXXXXXXNFVTEADRRALKDIEEFYHTSISE 465
NFVT D+R L DI++FY+ + E
Sbjct: 369 SGRFGRKGVAINFVTLDDQRMLFDIQKFYNVVVEE 403
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 210 bits (514), Expect = 3e-55
Identities = 98/155 (63%), Positives = 115/155 (74%)
Frame = +1
Query: 1 LEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHERDFTVSAM 180
LEGIKQFY+ ++ EEWKLETLCDLY+TL+I Q+VIF NTRRKVDWLT+ M RD TVSA
Sbjct: 251 LEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSAT 310
Query: 181 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENYXXXXXX 360
HGDMDQ R++IMR+FR+GSSRVLITTDLLARGIDVQQVS VIN+DLPT ENY
Sbjct: 311 HGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGR 370
Query: 361 XXXXXXXXXXXNFVTEADRRALKDIEEFYHTSISE 465
NF+T D R + DI+ FY+ + E
Sbjct: 371 SGRFGRKGVAINFMTSEDERMMADIQRFYNVVVEE 405
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 206 bits (502), Expect = 1e-53
Identities = 96/155 (61%), Positives = 115/155 (74%)
Frame = +1
Query: 1 LEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHERDFTVSAM 180
LEGIKQF++A+E EEWK +TLCDLYDTL+I QAVIFCNT+RKVD+L+E M +FTVS+M
Sbjct: 245 LEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDYLSEKMRSHNFTVSSM 304
Query: 181 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENYXXXXXX 360
HGDM Q+ER+ IM +FR+G SRVLITTD+ ARGIDVQQVS VINYDLP NRE Y
Sbjct: 305 HGDMPQKERDAIMNEFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGR 364
Query: 361 XXXXXXXXXXXNFVTEADRRALKDIEEFYHTSISE 465
NFV D + L+DIE++Y T I E
Sbjct: 365 SGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDE 399
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 181 bits (440), Expect = 3e-46
Identities = 87/155 (56%), Positives = 105/155 (67%)
Frame = +1
Query: 1 LEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHERDFTVSAM 180
LEGIKQ+Y+ ++ EEWK +TLCDLY L+I QA+IFCNTR+KVDWLTE M +F VS+M
Sbjct: 232 LEGIKQYYVDVDKEEWKFDTLCDLYGRLTINQAIIFCNTRQKVDWLTEKMRSSNFIVSSM 291
Query: 181 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENYXXXXXX 360
HGD Q+ER+ IM QFR+ SRVLI +D+ ARGIDVQ VS VINYD+P N E Y
Sbjct: 292 HGDKRQKERDDIMNQFRSFKSRVLIASDVWARGIDVQTVSHVINYDIPNNPELYIHRIGR 351
Query: 361 XXXXXXXXXXXNFVTEADRRALKDIEEFYHTSISE 465
NFV +D + LKDIE Y T I E
Sbjct: 352 AGRFGREGVAINFVKSSDMKDLKDIERHYGTKIRE 386
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 101 bits (243), Expect = 2e-22
Identities = 56/155 (36%), Positives = 79/155 (50%)
Frame = +1
Query: 1 LEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHERDFTVSAM 180
L+GI QFY +E E K+ L L+ L I Q++IFCN+ +V+ L + + E ++ +
Sbjct: 340 LKGITQFYAFVE-ERQKIHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYI 398
Query: 181 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENYXXXXXX 360
H M Q R + FR G+ R L+ TDL RGID+Q V+ VIN+D P N E Y
Sbjct: 399 HAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGR 458
Query: 361 XXXXXXXXXXXNFVTEADRRALKDIEEFYHTSISE 465
N +T DR L IE+ T I +
Sbjct: 459 SGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQ 493
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 101 bits (243), Expect = 2e-22
Identities = 56/155 (36%), Positives = 79/155 (50%)
Frame = +1
Query: 1 LEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHERDFTVSAM 180
L+GI QFY +E E K+ L L+ L I Q++IFCN+ +V+ L + + E ++ +
Sbjct: 340 LKGITQFYAFVE-ERQKIHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYI 398
Query: 181 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENYXXXXXX 360
H M Q R + FR G+ R L+ TDL RGID+Q V+ VIN+D P N E Y
Sbjct: 399 HAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGR 458
Query: 361 XXXXXXXXXXXNFVTEADRRALKDIEEFYHTSISE 465
N +T DR L IE+ T I +
Sbjct: 459 SGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQ 493
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 95.9 bits (228), Expect = 2e-20
Identities = 52/153 (33%), Positives = 77/153 (50%)
Frame = +1
Query: 1 LEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHERDFTVSAM 180
L G+ Q+Y +E E K+ L L+ L I Q++IFCN+ +V+ L + + E ++ +
Sbjct: 333 LMGVTQYYAFVE-ERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYI 391
Query: 181 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENYXXXXXX 360
H M Q R + +FR G+ R L+ TDL RGID+Q V+ VIN+D P E+Y
Sbjct: 392 HAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGR 451
Query: 361 XXXXXXXXXXXNFVTEADRRALKDIEEFYHTSI 459
N VT DR + E+ T I
Sbjct: 452 SGRFGHLGLAVNLVTYEDRFKMYQTEQELGTEI 484
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 95.9 bits (228), Expect = 2e-20
Identities = 52/153 (33%), Positives = 77/153 (50%)
Frame = +1
Query: 1 LEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHERDFTVSAM 180
L G+ Q+Y +E E K+ L L+ L I Q++IFCN+ +V+ L + + E ++ +
Sbjct: 333 LMGVTQYYAFVE-ERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYI 391
Query: 181 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENYXXXXXX 360
H M Q R + +FR G+ R L+ TDL RGID+Q V+ VIN+D P E+Y
Sbjct: 392 HAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGR 451
Query: 361 XXXXXXXXXXXNFVTEADRRALKDIEEFYHTSI 459
N VT DR + E+ T I
Sbjct: 452 SGRFGHLGLAVNLVTYEDRFKMYQTEQELGTEI 484
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 95.1 bits (226), Expect = 3e-20
Identities = 52/153 (33%), Positives = 76/153 (49%)
Frame = +1
Query: 1 LEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHERDFTVSAM 180
L G+ Q+Y +E E K+ L L+ L I Q++IFCN+ +V+ L + + E ++ +
Sbjct: 363 LMGVTQYYAFVE-ERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYI 421
Query: 181 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENYXXXXXX 360
H M Q R + FR G+ R L+ TDL RGID+Q V+ VIN+D P E+Y
Sbjct: 422 HAKMVQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGR 481
Query: 361 XXXXXXXXXXXNFVTEADRRALKDIEEFYHTSI 459
N VT DR + E+ T I
Sbjct: 482 SGRFGHLGLAVNLVTYEDRFKMYQTEQELGTEI 514
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 89.4 bits (212), Expect = 1e-18
Identities = 51/156 (32%), Positives = 74/156 (47%), Gaps = 1/156 (0%)
Frame = +1
Query: 1 LEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHERDFTVSAM 180
L G+ Q YI + E K L DL D L Q VIF + + L + + E +F +
Sbjct: 177 LHGLVQHYIKLSEME-KTRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICI 235
Query: 181 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENYXXXXXX 360
H M Q ER + F+ G R+L+ TDL+ RGID+++V+ VINYD+P + + Y
Sbjct: 236 HSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGR 295
Query: 361 XXXXXXXXXXXNFVTEA-DRRALKDIEEFYHTSISE 465
FV A D L ++E + I E
Sbjct: 296 AGRFGTKGLAITFVASASDSEVLNQVQERFEVDIKE 331
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 89.4 bits (212), Expect = 1e-18
Identities = 51/156 (32%), Positives = 74/156 (47%), Gaps = 1/156 (0%)
Frame = +1
Query: 1 LEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHERDFTVSAM 180
L G+ Q YI + E K L DL D L Q VIF + + L + + E +F +
Sbjct: 260 LHGLVQHYIKLSEME-KTRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICI 318
Query: 181 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENYXXXXXX 360
H M Q ER + F+ G R+L+ TDL+ RGID+++V+ VINYD+P + + Y
Sbjct: 319 HSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGR 378
Query: 361 XXXXXXXXXXXNFVTEA-DRRALKDIEEFYHTSISE 465
FV A D L ++E + I E
Sbjct: 379 AGRFGTKGLAITFVASASDSEVLNQVQERFEVDIKE 414
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 89.0 bits (211), Expect = 2e-18
Identities = 44/115 (38%), Positives = 63/115 (54%)
Frame = +1
Query: 91 AQAVIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLL 270
++ +IFC+T+R D L S+ R F +HGD Q ER+ ++ QFR+G S VLI TD+
Sbjct: 681 SKVIIFCSTKRLCDHLARSVG-RHFGAVVIHGDKTQGERDWVLNQFRSGKSCVLIATDVA 739
Query: 271 ARGIDVQQVSCVINYDLPTNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDI 435
ARG+D++ + VINYD PT E+Y F TE D + D+
Sbjct: 740 ARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDWKYAPDL 794
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 88.6 bits (210), Expect = 2e-18
Identities = 51/156 (32%), Positives = 74/156 (47%), Gaps = 1/156 (0%)
Frame = +1
Query: 1 LEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHERDFTVSAM 180
L G+ Q YI + E K L DL D L Q VIF + + L + + E +F +
Sbjct: 260 LHGLVQHYIKLSEME-KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICI 318
Query: 181 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENYXXXXXX 360
H M Q ER + F+ G R+L+ TDL+ RGID+++V+ VINYD+P + + Y
Sbjct: 319 HSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGR 378
Query: 361 XXXXXXXXXXXNFVTEA-DRRALKDIEEFYHTSISE 465
FV A D L ++E + I E
Sbjct: 379 AGRFGTKGLAITFVASASDSEVLNQVQERFEVDIKE 414
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 88.6 bits (210), Expect = 2e-18
Identities = 40/115 (34%), Positives = 64/115 (55%)
Frame = +1
Query: 91 AQAVIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLL 270
++ +IFC+T+R D LT ++ R F +A+HGD Q ER+ ++ QFR+G + VL+ TD+
Sbjct: 404 SKVIIFCSTKRMCDQLTRNL-TRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVA 462
Query: 271 ARGIDVQQVSCVINYDLPTNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDI 435
ARG+DV+ + V+NYD P E+Y F + D + D+
Sbjct: 463 ARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDL 517
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 88.6 bits (210), Expect = 2e-18
Identities = 40/115 (34%), Positives = 64/115 (55%)
Frame = +1
Query: 91 AQAVIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLL 270
++ +IFC+T+R D LT ++ R F +A+HGD Q ER+ ++ QFR+G + VL+ TD+
Sbjct: 404 SKVIIFCSTKRMCDQLTRNL-TRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVA 462
Query: 271 ARGIDVQQVSCVINYDLPTNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDI 435
ARG+DV+ + V+NYD P E+Y F + D + D+
Sbjct: 463 ARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDL 517
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 88.6 bits (210), Expect = 2e-18
Identities = 40/115 (34%), Positives = 64/115 (55%)
Frame = +1
Query: 91 AQAVIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLL 270
++ +IFC+T+R D LT ++ R F +A+HGD Q ER+ ++ QFR+G + VL+ TD+
Sbjct: 404 SKVIIFCSTKRMCDQLTRNL-TRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVA 462
Query: 271 ARGIDVQQVSCVINYDLPTNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDI 435
ARG+DV+ + V+NYD P E+Y F + D + D+
Sbjct: 463 ARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDL 517
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 85.8 bits (203), Expect = 2e-17
Identities = 39/115 (33%), Positives = 63/115 (54%)
Frame = +1
Query: 91 AQAVIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLL 270
++ +IFC+T+R D L ++ R F +A+HGD Q ER+ ++ QFR+G + VL+ TD+
Sbjct: 475 SKIIIFCSTKRMCDQLARNL-TRTFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVA 533
Query: 271 ARGIDVQQVSCVINYDLPTNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDI 435
ARG+DV+ + V+NYD P E+Y F + D + D+
Sbjct: 534 ARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDL 588
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 82.6 bits (195), Expect = 2e-16
Identities = 37/113 (32%), Positives = 73/113 (64%), Gaps = 1/113 (0%)
Frame = +1
Query: 1 LEGIKQFYIAIELEEWKLETLCD-LYDTLSIAQAVIFCNTRRKVDWLTESMHERDFTVSA 177
L+ +KQ+ + E+ K+E + D + + I Q +IF T+ + +++ E + V++
Sbjct: 310 LDSVKQYKVVCPKEQNKIEVIKDQIMELGDIGQTIIFVKTKASAQKVHKALAEMGYDVTS 369
Query: 178 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRE 336
+HG++ + +R+ I+++F+ ++VLI TD++ARG D Q+V+ V+NY+LPT E
Sbjct: 370 VHGNLTESDRDKIVKEFKECLTQVLIATDVIARGFDQQRVNLVVNYNLPTKYE 422
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 82.6 bits (195), Expect = 2e-16
Identities = 40/140 (28%), Positives = 70/140 (50%)
Frame = +1
Query: 22 YIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQR 201
++ + E K L L D L A++F NT++ D + +++ + + V+ +HG Q
Sbjct: 554 HVIMMKESEKFFRLQKLLDELGEKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQE 613
Query: 202 EREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENYXXXXXXXXXXXXX 381
+RE+ + FR VL+ TD++ RGID+ V+ VINYD+P + E Y
Sbjct: 614 QREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKS 673
Query: 382 XXXXNFVTEADRRALKDIEE 441
+F+T D D+++
Sbjct: 674 GVATSFLTLHDTEVFYDLKQ 693
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 79.8 bits (188), Expect = 1e-15
Identities = 37/122 (30%), Positives = 65/122 (53%)
Frame = +1
Query: 70 LYDTLSIAQAVIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRV 249
L D + ++ ++F +T++ D +T + + ++HGD Q ER+ ++ +FR+G S +
Sbjct: 338 LEDIMDGSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPI 397
Query: 250 LITTDLLARGIDVQQVSCVINYDLPTNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALK 429
+ TD+ ARG+DV+ V VINYD P + E+Y F T A+ R K
Sbjct: 398 MTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAK 457
Query: 430 DI 435
++
Sbjct: 458 EL 459
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 79.4 bits (187), Expect = 1e-15
Identities = 36/122 (29%), Positives = 64/122 (52%)
Frame = +1
Query: 100 VIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 279
++F T+R D L + +F +++HGD Q+EREV +R F+TG + +L+ TD+ ARG
Sbjct: 412 LVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARG 471
Query: 280 IDVQQVSCVINYDLPTNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDIEEFYHTSI 459
+D+ V+ V+N+DLP + ++Y F E + + + + E +
Sbjct: 472 LDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLARSLAELMQEAN 531
Query: 460 SE 465
E
Sbjct: 532 QE 533
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 79.4 bits (187), Expect = 1e-15
Identities = 36/122 (29%), Positives = 64/122 (52%)
Frame = +1
Query: 100 VIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 279
++F T+R D L + +F +++HGD Q+EREV +R F+TG + +L+ TD+ ARG
Sbjct: 412 LVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARG 471
Query: 280 IDVQQVSCVINYDLPTNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDIEEFYHTSI 459
+D+ V+ V+N+DLP + ++Y F E + + + + E +
Sbjct: 472 LDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLARSLAELMQEAN 531
Query: 460 SE 465
E
Sbjct: 532 QE 533
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 77.4 bits (182), Expect = 6e-15
Identities = 31/84 (36%), Positives = 53/84 (63%)
Frame = +1
Query: 91 AQAVIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLL 270
++ +IF T+R D +T + + A+HGD Q ER+ ++ +F++G S ++ TD+
Sbjct: 411 SKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVA 470
Query: 271 ARGIDVQQVSCVINYDLPTNRENY 342
ARG+DV+ + CV+NYD P E+Y
Sbjct: 471 ARGLDVKDIKCVVNYDFPNTLEDY 494
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 76.2 bits (179), Expect = 1e-14
Identities = 32/84 (38%), Positives = 54/84 (64%)
Frame = +1
Query: 91 AQAVIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLL 270
A ++F T++ D L + F + +HGD Q+EREV +R F+TG + +L+ TD+
Sbjct: 406 ALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVA 465
Query: 271 ARGIDVQQVSCVINYDLPTNRENY 342
ARG+D+ V+ V+N+DLP + ++Y
Sbjct: 466 ARGLDIPHVAHVVNFDLPNDIDDY 489
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 74.9 bits (176), Expect = 3e-14
Identities = 37/115 (32%), Positives = 59/115 (51%)
Frame = +1
Query: 94 QAVIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 273
+ ++F T+R D L+ ++ R F A+HGD+ Q +RE + FR G +L+ TD+ A
Sbjct: 351 KCIVFTQTKRDADRLSYAL-ARSFKCEALHGDISQSQRERTLAGFRDGHFNILVATDVAA 409
Query: 274 RGIDVQQVSCVINYDLPTNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDIE 438
RG+DV V +I+Y+LP N E + ++ RA+K IE
Sbjct: 410 RGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVKIIE 464
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 74.1 bits (174), Expect = 5e-14
Identities = 43/144 (29%), Positives = 65/144 (45%)
Frame = +1
Query: 4 EGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHERDFTVSAMH 183
E +KQ + EE KL L + +IF ++ + L + + + +H
Sbjct: 352 ETVKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYDELKCENIRAGVIH 411
Query: 184 GDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENYXXXXXXX 363
D+ ERE + QFR G VLI TD++ARG+D + ++CVINYD P + Y
Sbjct: 412 SDLPPGERENAVDQFRAGEKWVLIATDVIARGMDFKGINCVINYDFPDSASAYIHRIGRS 471
Query: 364 XXXXXXXXXXNFVTEADRRALKDI 435
F TE D L++I
Sbjct: 472 GRAGRSGEAITFYTEQDVPFLRNI 495
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 74.1 bits (174), Expect = 5e-14
Identities = 31/84 (36%), Positives = 55/84 (65%)
Frame = +1
Query: 91 AQAVIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLL 270
A ++F T+R D L + F +++HGD Q+EREV ++ F++G + +L+ TD+
Sbjct: 419 ALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVA 478
Query: 271 ARGIDVQQVSCVINYDLPTNRENY 342
ARG+D+ V+ V+N+DLP + ++Y
Sbjct: 479 ARGLDIPHVAHVVNFDLPNDIDDY 502
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 71.7 bits (168), Expect = 3e-13
Identities = 41/146 (28%), Positives = 69/146 (47%), Gaps = 1/146 (0%)
Frame = +1
Query: 4 EGIKQFYIAIELEEWKLETLCDLYDTLSIA-QAVIFCNTRRKVDWLTESMHERDFTVSAM 180
EGIK + IA K L DL + + ++F T+R D ++ ++ A+
Sbjct: 323 EGIKLYAIATTSTS-KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL-SNSIATEAL 380
Query: 181 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENYXXXXXX 360
HGD+ Q +RE + FR G VL+ TD+ +RG+D+ V VI+Y+LP + E +
Sbjct: 381 HGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGR 440
Query: 361 XXXXXXXXXXXNFVTEADRRALKDIE 438
T + +R ++ +E
Sbjct: 441 TGRAGKEGSAILMHTSSQKRTVRSLE 466
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 70.5 bits (165), Expect = 7e-13
Identities = 36/116 (31%), Positives = 58/116 (50%)
Frame = +1
Query: 94 QAVIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 273
+ ++F T+R D L + + + A+HGD+ Q +RE + FR G+ +L+ TD+ A
Sbjct: 363 KCIVFTQTKRDADRLAFGL-AKSYKCEALHGDISQAQRERTLAGFRDGNFSILVATDVAA 421
Query: 274 RGIDVQQVSCVINYDLPTNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDIEE 441
RG+DV V VI+Y+LP N E + + RA+K IE+
Sbjct: 422 RGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTRAVKMIEK 477
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 70.5 bits (165), Expect = 7e-13
Identities = 32/107 (29%), Positives = 57/107 (53%)
Frame = +1
Query: 22 YIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQR 201
Y I + K++TL L + F N R++ + + R + MHGD+ +
Sbjct: 385 YYCISKHQHKVDTLRRCVHALDAQSVIAFMNHSRQLKDVVYKLEARGMNSAEMHGDLGKL 444
Query: 202 EREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENY 342
R ++++F+ G +VL+T +L ARG+DV + V+N +LPT+ +Y
Sbjct: 445 GRSTVLKKFKNGEIKVLVTNELSARGLDVAECDLVVNLELPTDAVHY 491
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 68.9 bits (161), Expect = 2e-12
Identities = 32/92 (34%), Positives = 53/92 (57%)
Frame = +1
Query: 46 WKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQ 225
W LE L + D ++F + + VD + + F V+A+HGD DQ R +++
Sbjct: 462 WLLEKLPGMIDE---GDVLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQK 518
Query: 226 FRTGSSRVLITTDLLARGIDVQQVSCVINYDL 321
F++G VLI TD+ ARG+D++ + V+NYD+
Sbjct: 519 FKSGVHHVLIATDVAARGLDIKSLKTVVNYDI 550
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 68.5 bits (160), Expect = 3e-12
Identities = 30/81 (37%), Positives = 46/81 (56%)
Frame = +1
Query: 100 VIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 279
+IFC + VD + E + + A+HG DQ +RE + F+ G VL+ TD+ ++G
Sbjct: 401 LIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKDVLVATDVASKG 460
Query: 280 IDVQQVSCVINYDLPTNRENY 342
+D + VINYD+P ENY
Sbjct: 461 LDFPDIQHVINYDMPAEIENY 481
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 65.7 bits (153), Expect = 2e-11
Identities = 29/81 (35%), Positives = 46/81 (56%)
Frame = +1
Query: 100 VIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 279
+IFC + VD + E + + A+HG DQ +R+ + F+ G VL+ TD+ ++G
Sbjct: 352 LIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKG 411
Query: 280 IDVQQVSCVINYDLPTNRENY 342
+D + VINYD+P ENY
Sbjct: 412 LDFPDIQHVINYDMPGEIENY 432
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 65.3 bits (152), Expect = 3e-11
Identities = 34/117 (29%), Positives = 57/117 (48%)
Frame = +1
Query: 94 QAVIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 273
Q +IF +T+ V+++ + S +GDMDQ R++ + +FR + +LI TD+ A
Sbjct: 273 QTLIFVSTKHHVEFVNSLFKLENIEPSVCYGDMDQDARKIHVSRFRARKTMLLIVTDIAA 332
Query: 274 RGIDVQQVSCVINYDLPTNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDIEEF 444
RGID+ + VIN+D P + + +FVT D + D+ F
Sbjct: 333 RGIDIPLLDNVINWDFPPRPKIFVHRVGRAARAGRTGCAYSFVTPEDMPYMLDLHLF 389
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 65.3 bits (152), Expect = 3e-11
Identities = 30/112 (26%), Positives = 55/112 (49%)
Frame = +1
Query: 100 VIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 279
++F ++ K D L M + + ++HG DQ +RE + F+ +LI T + ARG
Sbjct: 780 LVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIATSVAARG 839
Query: 280 IDVQQVSCVINYDLPTNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDI 435
+DV+++ V+N+D P + E+Y F++E D + D+
Sbjct: 840 LDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDL 891
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 64.5 bits (150), Expect = 4e-11
Identities = 35/118 (29%), Positives = 57/118 (48%)
Frame = +1
Query: 88 IAQAVIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDL 267
I A+IF +T R L+ + E + AMH Q R + +F++G +L+ TD+
Sbjct: 302 IRSAMIFVSTCRTCQRLSLMLDELEVENIAMHSLNSQSMRLSALSKFKSGKVPILLATDV 361
Query: 268 LARGIDVQQVSCVINYDLPTNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDIEE 441
+RG+D+ V VINYD+P + +Y + +TE D + + IEE
Sbjct: 362 ASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVKLIHKIEE 419
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 62.9 bits (146), Expect = 1e-10
Identities = 35/113 (30%), Positives = 56/113 (49%)
Frame = +1
Query: 4 EGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHERDFTVSAMH 183
EG++Q Y + ++ + + L L+ + ++F +T + V + TE M D VS +H
Sbjct: 307 EGLEQGYCVVPSKQRLILLISFLKKNLN-KKIMVFFSTCKSVQFHTEIMKISDVDVSDIH 365
Query: 184 GDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENY 342
G MDQ R F +L+ TD+ ARG+D+ V +I YD P Y
Sbjct: 366 GGMDQNRRTKTFFDFMKAKKGILLCTDVAARGLDIPSVDWIIQYDPPDKPTEY 418
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 59.3 bits (137), Expect = 2e-09
Identities = 27/82 (32%), Positives = 45/82 (54%)
Frame = +1
Query: 97 AVIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLAR 276
++IF T +L + F + G M Q +R + +F+ G +L+ TD+ +R
Sbjct: 263 SMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVASR 322
Query: 277 GIDVQQVSCVINYDLPTNRENY 342
G+D+ V VINYD+PTN ++Y
Sbjct: 323 GLDIPSVDVVINYDIPTNSKDY 344
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 58.8 bits (136), Expect = 2e-09
Identities = 29/98 (29%), Positives = 51/98 (52%)
Frame = +1
Query: 49 KLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQF 228
+L L + Y + ++F + + + L + +R + ++HG+ Q ER + F
Sbjct: 353 RLIALLEKYHKSQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLF 412
Query: 229 RTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENY 342
+ GS +L+ TD+ ARG+D+ V VINY P E+Y
Sbjct: 413 KEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDY 450
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 56.0 bits (129), Expect = 2e-08
Identities = 33/115 (28%), Positives = 51/115 (44%)
Frame = +1
Query: 91 AQAVIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLL 270
++ +IF T++ L + +HG++ Q +R + FR LI TD+
Sbjct: 413 SKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLIATDVA 472
Query: 271 ARGIDVQQVSCVINYDLPTNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDI 435
ARG+D+ V VINY P ++Y FVT++DR LK I
Sbjct: 473 ARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKVI 527
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 55.6 bits (128), Expect = 2e-08
Identities = 26/83 (31%), Positives = 43/83 (51%)
Frame = +1
Query: 94 QAVIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 273
+ +IFC T + + + + V +H Q R + +FR S +L+T+D+ A
Sbjct: 340 KVIIFCTTAMVTRLVADLLGKLSLNVREIHSRKPQSYRTRVSDEFRKSKSIILVTSDVSA 399
Query: 274 RGIDVQQVSCVINYDLPTNRENY 342
RG+D VS V+ LP++RE Y
Sbjct: 400 RGVDYPDVSLVVQMGLPSDREQY 422
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 55.6 bits (128), Expect = 2e-08
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Frame = +1
Query: 70 LYDTLSI---AQAVIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGS 240
LY LS+ + ++FC + + ++ + V + +M QR R + +FR
Sbjct: 493 LYYILSVHGQGRTIVFCTSVTDLRHISGLLKILGLDVCTLFSEMKQRARLKSIDRFRASE 552
Query: 241 SRVLITTDLLARGIDVQQVSCVINYDLPTNRENY 342
+ +LI TDL+ARGID++ V +I+Y LP + E Y
Sbjct: 553 NGILIATDLVARGIDIKNVRTIIHYKLPHSAEVY 586
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 55.2 bits (127), Expect = 3e-08
Identities = 25/83 (30%), Positives = 43/83 (51%)
Frame = +1
Query: 94 QAVIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 273
+ +IFC T + + + + V +H Q R + +FR + +L+T+D+ A
Sbjct: 642 KVIIFCTTAMVTRLVADLLSQLSLNVREIHSRKPQSYRTRVSDEFRKSKAIILVTSDVSA 701
Query: 274 RGIDVQQVSCVINYDLPTNRENY 342
RG+D VS V+ LP++RE Y
Sbjct: 702 RGVDYPDVSLVVQMGLPSDREQY 724
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 54.8 bits (126), Expect = 4e-08
Identities = 24/83 (28%), Positives = 42/83 (50%)
Frame = +1
Query: 94 QAVIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 273
+ ++FC T + + + E + V +H Q R + +FR +L+T+D+ A
Sbjct: 314 KVIVFCTTAMVTKLVADLLGELNLNVREIHSRKPQSYRTRVSNEFRKSKGLILVTSDVSA 373
Query: 274 RGIDVQQVSCVINYDLPTNRENY 342
RG+D V+ V+ LP +RE Y
Sbjct: 374 RGVDYPDVTLVLQVGLPKDREQY 396
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 54.0 bits (124), Expect = 6e-08
Identities = 22/55 (40%), Positives = 32/55 (58%)
Frame = +1
Query: 178 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENY 342
+HG M+Q +R F+T VL++TD+ ARG+D +V C+I YD P Y
Sbjct: 379 LHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCIIQYDCPGEATEY 433
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 52.8 bits (121), Expect = 1e-07
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Frame = +1
Query: 7 GIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDW----LTESMHERDFTVS 174
G+ Y+ E ++ K L DL S + ++F T VD+ L++ + ++
Sbjct: 248 GLHLEYMECEADK-KSSQLVDLLIKNSDKKLIVFFMTCASVDYWGLVLSKIPALKSISLI 306
Query: 175 AMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLP 324
+HGDM Q R+ + F SS L+ TD+ ARG+D+ + V+ YD P
Sbjct: 307 PIHGDMKQNARDKALASFTKASSGALLCTDVAARGLDIPGIDYVVQYDPP 356
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 52.4 bits (120), Expect = 2e-07
Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 3/136 (2%)
Frame = +1
Query: 43 EWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHER--DFTVSAMHGDMDQREREVI 216
E KL+ L T ++ ++F +T+++V ++ E+ ++ + ++HG M Q +R +
Sbjct: 301 EKKLDMLWSFIKTHLNSRILVFLSTKKQVKFVHEAFNKLRPGIPLKSLHGKMSQEKRMGV 360
Query: 217 MRQFRTGSSRVLITTDLLARGIDVQQ-VSCVINYDLPTNRENYXXXXXXXXXXXXXXXXX 393
QF S VL TD+LARG+D + V V+ D P + +Y
Sbjct: 361 YSQFIERQS-VLFCTDVLARGLDFDKAVDWVVQVDCPEDVASYIHRVGRTARFYTQGKSL 419
Query: 394 NFVTEADRRALKDIEE 441
F+T ++ + ++ ++E
Sbjct: 420 LFLTPSEEKMIEKLQE 435
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 52.4 bits (120), Expect = 2e-07
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Frame = +1
Query: 97 AVIFCNTRRKVDWLTESMHE-RDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 273
AV++ ++R D L ++ ++HG+ +ER +M F G VL++T +L
Sbjct: 360 AVVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLG 419
Query: 274 RGIDVQQVSCVINYDLPTNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDI 435
RG+D+ V VI +D+P+ + Y FV E DR D+
Sbjct: 420 RGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVNEDDRNLFPDL 473
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 52.4 bits (120), Expect = 2e-07
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Frame = +1
Query: 97 AVIFCNTRRKVDWLTESMHE-RDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 273
AV++ ++R D L ++ ++HG+ +ER +M F G VL++T +L
Sbjct: 223 AVVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLG 282
Query: 274 RGIDVQQVSCVINYDLPTNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDI 435
RG+D+ V VI +D+P+ + Y FV E DR D+
Sbjct: 283 RGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVNEDDRNLFPDL 336
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 51.6 bits (118), Expect = 3e-07
Identities = 27/83 (32%), Positives = 44/83 (53%)
Frame = +1
Query: 94 QAVIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 273
Q +IF T+ +V L+ + A+HG++ Q +REV + FR G L+ T++ A
Sbjct: 352 QTIIFAETKVQVSELSGLLDGS----RALHGEIPQSQREVTLAGFRNGKFATLVATNVAA 407
Query: 274 RGIDVQQVSCVINYDLPTNRENY 342
RG+D+ V +I + P E Y
Sbjct: 408 RGLDINDVQLIIQCEPPREVEAY 430
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 50.8 bits (116), Expect = 6e-07
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 5/145 (3%)
Frame = +1
Query: 22 YIAIELEEWKLETLCDLYDTLSIAQA---VIFCNTRRKVDWLTESMHERDFTVSAMHGDM 192
+I + E KLE L + + S+A+ ++FCNT + + E + HG++
Sbjct: 346 FIKLSGGEDKLEALLQVLEP-SLAKGSKVMVFCNTLNSSRAVDHYLSENQISTVNYHGEV 404
Query: 193 DQREREVIMRQFR--TGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENYXXXXXXXX 366
+R +++F+ G L+ TDL ARG+D+ V V+ +D P N +Y
Sbjct: 405 PAEQRVENLKKFKDEEGDCPTLVCTDLAARGLDL-DVDHVVMFDFPKNSIDYLHRTGRTA 463
Query: 367 XXXXXXXXXNFVTEADRRALKDIEE 441
+ V+ D+ IEE
Sbjct: 464 RMGAKGKVTSLVSRKDQMLAARIEE 488
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 50.8 bits (116), Expect = 6e-07
Identities = 22/81 (27%), Positives = 42/81 (51%)
Frame = +1
Query: 100 VIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 279
++FC+T + + E V +H Q R + +F+ + +L+T+D+ ARG
Sbjct: 638 IVFCSTGMVTSLMYTLLREMKLNVREIHARKPQLHRTCVSDEFKESNRLILVTSDVSARG 697
Query: 280 IDVQQVSCVINYDLPTNRENY 342
++ V+ VI +P++RE Y
Sbjct: 698 MNYPDVTLVIQVGIPSDREQY 718
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 50.4 bits (115), Expect = 8e-07
Identities = 21/64 (32%), Positives = 39/64 (60%)
Frame = +1
Query: 91 AQAVIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLL 270
++ +IF T+R D +T + + A+HGD Q ER+ ++ +F++G S ++ TD+
Sbjct: 411 SKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVA 470
Query: 271 ARGI 282
ARG+
Sbjct: 471 ARGL 474
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 50.4 bits (115), Expect = 8e-07
Identities = 33/106 (31%), Positives = 54/106 (50%)
Frame = +1
Query: 7 GIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHERDFTVSAMHG 186
G+K Y+ L+ W+ E C ++ T S+ T R++ L + G
Sbjct: 310 GMKPVYLVALLKSWEGEK-CIIF-TSSV-------ETTRRLCKLLNFFGDPKIKAKEYSG 360
Query: 187 DMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLP 324
++Q R ++ FR G +VL+ +D L RG+DV+ V+ VINYD+P
Sbjct: 361 GLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMP 406
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 50.0 bits (114), Expect = 1e-06
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = +1
Query: 181 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLP 324
HG MDQ+ R+ + F SS VL+ TD+ ARG+D+ + V+ YD P
Sbjct: 300 HGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIDYVVQYDPP 347
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 50.0 bits (114), Expect = 1e-06
Identities = 22/81 (27%), Positives = 42/81 (51%)
Frame = +1
Query: 100 VIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 279
++FC+T + + E V +H Q R + +F+ + +L+T+D+ ARG
Sbjct: 591 IVFCSTGMVTSLMYTLLREMKLNVREIHARKPQLHRTRVSDEFKESNRLILVTSDVSARG 650
Query: 280 IDVQQVSCVINYDLPTNRENY 342
++ V+ VI +P++RE Y
Sbjct: 651 MNYPDVTLVIQVGIPSDREQY 671
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 47.6 bits (108), Expect = 5e-06
Identities = 29/113 (25%), Positives = 50/113 (44%)
Frame = +1
Query: 4 EGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHERDFTVSAMH 183
EG++Q Y + L L L + ++F +T + + E F +
Sbjct: 372 EGLEQGYCVVPSAMRLLFLLTFLKRFQGKKKIMVFFSTCKSTKFHAELFRYIKFDCLEIR 431
Query: 184 GDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENY 342
G +DQ +R QF + +L+ T++ ARG+D V ++ YD P N +Y
Sbjct: 432 GGIDQNKRTPTFLQFIKAETGILLCTNVAARGLDFPHVDWIVQYDPPDNPTDY 484
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 47.6 bits (108), Expect = 5e-06
Identities = 19/67 (28%), Positives = 38/67 (56%)
Frame = +1
Query: 142 ESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDL 321
++ ++ + + GDM+ R + + R G +L++TD+ ARGID+ + + + N+DL
Sbjct: 359 KTSYKGSLEILLLEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDL 418
Query: 322 PTNRENY 342
P +Y
Sbjct: 419 PQTVTDY 425
>At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 315
Score = 47.6 bits (108), Expect = 5e-06
Identities = 19/67 (28%), Positives = 38/67 (56%)
Frame = +1
Query: 142 ESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDL 321
++ ++ + + GDM+ R + + R G +L++TD+ ARGID+ + + + N+DL
Sbjct: 202 KTSYKGSLEILLLEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDL 261
Query: 322 PTNRENY 342
P +Y
Sbjct: 262 PQTVTDY 268
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 46.4 bits (105), Expect = 1e-05
Identities = 21/79 (26%), Positives = 39/79 (49%)
Frame = +1
Query: 199 REREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENYXXXXXXXXXXXX 378
R +E + F++ +LI T + ARG+DV+++ V+N+D P + E+Y
Sbjct: 651 RSQEKSISDFKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGR 710
Query: 379 XXXXXNFVTEADRRALKDI 435
F++E D + D+
Sbjct: 711 KGCAVTFISEDDAKYAPDL 729
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 45.6 bits (103), Expect = 2e-05
Identities = 18/85 (21%), Positives = 40/85 (47%)
Frame = +1
Query: 88 IAQAVIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDL 267
I +++C + + D +++ + + + H + ++R I F + RV++ T
Sbjct: 486 IRSIIVYCKFQYETDMISKYLRDNNINAKGYHSGLPAKDRVRIQESFCSNKIRVVVATVA 545
Query: 268 LARGIDVQQVSCVINYDLPTNRENY 342
G+D V VI++ +P + E Y
Sbjct: 546 FGMGLDKGDVGAVIHFSVPGSMEEY 570
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 45.2 bits (102), Expect = 3e-05
Identities = 29/116 (25%), Positives = 50/116 (43%)
Frame = +1
Query: 94 QAVIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 273
+ ++F NT V+ + + + + H + ER I+ FR + V + TD A
Sbjct: 426 RTMVFANTVEAVEAVADILEKASIQCYRYHKNHKLDERANILADFRE-TGGVFVCTDAAA 484
Query: 274 RGIDVQQVSCVINYDLPTNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDIEE 441
RG+DV VS VI D ++ ++ + TEA+R ++ I E
Sbjct: 485 RGVDVPNVSHVIQADFASSAVDFLHRIGRTARAGQYGTVTSLYTEANRDLVEAIRE 540
>At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly
identical to DNA Helicase [Arabidopsis thaliana]
GI:11121445
Length = 705
Score = 45.2 bits (102), Expect = 3e-05
Identities = 20/81 (24%), Positives = 40/81 (49%)
Frame = +1
Query: 100 VIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 279
+++C +R++ + + + ER + H DMD RE + ++ +V++ T G
Sbjct: 317 IVYCFSRKECEQIAGDLRERGISADYYHADMDANMREKVHMRWSKNKLQVIVGTVAFGMG 376
Query: 280 IDVQQVSCVINYDLPTNRENY 342
I+ V VI++ L + E Y
Sbjct: 377 INKPDVRFVIHHSLSKSMETY 397
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 44.8 bits (101), Expect = 4e-05
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 9/107 (8%)
Frame = +1
Query: 49 KLETLCDLYDTLSIAQAVIFCN---TRRKVDWLTESMH--ERDFTVSAMHGDMDQREREV 213
K L + + +++ +IFCN T RKV+ + + + ER V H + Q R
Sbjct: 622 KKTALLQIMEENPVSKTIIFCNKIETCRKVENIFKRVDRKERQLHVLPFHAALSQESRLT 681
Query: 214 IMRQFRTG----SSRVLITTDLLARGIDVQQVSCVINYDLPTNRENY 342
M++F + +S L+ TD +RGID V V+ +D P + Y
Sbjct: 682 NMQEFTSSQPEENSLFLVCTDRASRGIDFSGVDHVVLFDFPRDPSEY 728
>At1g60930.1 68414.m06858 DNA helicase, putative strong similarity
to DNA Helicase recQl4B [Arabidopsis thaliana]
GI:11121451; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00570: HRDC domain
Length = 1024
Score = 43.6 bits (98), Expect = 9e-05
Identities = 21/81 (25%), Positives = 39/81 (48%)
Frame = +1
Query: 100 VIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 279
+I+C +R + +TE++ + HG MD +R + +Q+ ++ T G
Sbjct: 630 IIYCLSRMDCEKVTEALRVFGHKAAFYHGSMDPGKRAFVQKQWSKDEINIICATVAFGMG 689
Query: 280 IDVQQVSCVINYDLPTNRENY 342
I+ V VI++ LP + E Y
Sbjct: 690 INKPDVRFVIHHSLPKSIEGY 710
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/81 (25%), Positives = 38/81 (46%)
Frame = +1
Query: 100 VIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 279
+I+C +R + ++E + E + HG M+ +R I Q+ ++ T G
Sbjct: 677 IIYCLSRMDCEKVSERLQEFGHKAAFYHGSMEPEQRAFIQTQWSKDEINIICATVAFGMG 736
Query: 280 IDVQQVSCVINYDLPTNRENY 342
I+ V VI++ LP + E Y
Sbjct: 737 INKPDVRFVIHHSLPKSIEGY 757
>At4g37020.1 68417.m05244 expressed protein
Length = 212
Score = 41.9 bits (94), Expect = 3e-04
Identities = 42/183 (22%), Positives = 79/183 (43%), Gaps = 34/183 (18%)
Frame = +1
Query: 19 FYIAIELEEWKLETLCDLYDTLS---IAQAVIFCNTRRKVDWLTESMHERDF-TVSAMHG 186
FY+A++ ++K+ET+ +L L V+ C++R ++D + S+ + +++A++
Sbjct: 23 FYLAVDRPQFKMETVVELLGVLGRRPWLPIVVCCSSRDELDAVCSSLSTLPYISLAALYS 82
Query: 187 DMDQREREVIMRQFRTG--------------------------SSRVLITTD----LLAR 276
D+ RER +++ +FR +S +++ TD LL+
Sbjct: 83 DLADRERAMVIEKFRQATINWNQQLNSVVEEGLEESENGKEEKTSHLVVVTDVCLPLLSS 142
Query: 277 GIDVQQVSCVINYDLPTNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDIEEFYHTS 456
G +INY+LPT +E Y N V + LK +EE
Sbjct: 143 GESSLSARVLINYELPTKKETY--TRRITTCLASGGIVINMVVGGEVTTLKSLEESSGIL 200
Query: 457 ISE 465
I+E
Sbjct: 201 IAE 203
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 41.9 bits (94), Expect = 3e-04
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Frame = +1
Query: 7 GIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDW----LTESMHERDFTVS 174
G++ Y+ E ++ K L L + V+F T VD+ +++ + +
Sbjct: 212 GLRNPYLKCEADQ-KSSQLVHLLIENKNKKLVVFFMTCACVDYWGLVISKIPSLKSISFF 270
Query: 175 AMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDV 288
HG MDQ+ R+ + F SS VL+ TD+ ARG+D+
Sbjct: 271 PTHGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDI 308
>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar
to CAF protein [Arabidopsis thaliana] GI:6102610;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF03368:
Domain of unknown function, PF00636: RNase3 domain,
PF00035: Double-stranded RNA binding motif
Length = 1676
Score = 40.7 bits (91), Expect = 6e-04
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +1
Query: 160 DFTVSAMHG--DMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLP 324
DF V G M +R E I+++F++ +L+ T + G+D+Q VI YDLP
Sbjct: 543 DFLVGLSSGLKSMSRRSMETILKRFQSKELNLLVATKVGEEGLDIQTCCLVIRYDLP 599
>At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative similar
to C-terminal half of transcription-repair coupling
factor (TRCF) GB:Q55750 [Synechocystis PCC6803];
contains Pfam profile: helicases conserved C-terminal
domain
Length = 823
Score = 39.5 bits (88), Expect = 0.001
Identities = 18/65 (27%), Positives = 37/65 (56%)
Frame = +1
Query: 127 VDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCV 306
+D+L E+ + D ++ HG ++ E M +F G ++LI T+++ G+D+Q + +
Sbjct: 497 MDFLEEAFPDIDIAMA--HGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQNANTI 554
Query: 307 INYDL 321
I D+
Sbjct: 555 IIQDV 559
>At1g12700.1 68414.m01473 helicase domain-containing protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles PF01535: PPR repeat, PF00271:
Helicase conserved C-terminal domain
Length = 828
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/66 (22%), Positives = 38/66 (57%)
Frame = +1
Query: 145 SMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLP 324
++ R + ++ D+ + R ++++F+ RVL+T +LL G++ + +++ +LP
Sbjct: 634 TIEARGMNSAELNRDLRKLRRSSVLKKFKNRDVRVLVTNELLTWGLEDAECDLMVDLELP 693
Query: 325 TNRENY 342
T+ +Y
Sbjct: 694 TDAVHY 699
>At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative
Length = 953
Score = 38.3 bits (85), Expect = 0.003
Identities = 13/49 (26%), Positives = 30/49 (61%)
Frame = +1
Query: 163 FTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVI 309
+ +HG M ++E + +FR+G +++L++T ++ G+DV S ++
Sbjct: 797 YNCGLLHGRMKSDDKEEALNKFRSGETQILLSTQVIEIGVDVPDASMMV 845
>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein
helicase, putative
Length = 2172
Score = 35.1 bits (77), Expect = 0.031
Identities = 15/43 (34%), Positives = 28/43 (65%)
Frame = +1
Query: 181 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVI 309
H + + +RE++ QFR G+ +VLI+T LA G+++ + +I
Sbjct: 811 HAGLTRTDREIVENQFRWGNLQVLISTATLAWGVNLPAHTVII 853
>At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low
similarity to RNA helicase/RNAseIII CAF protein
[Arabidopsis thaliana] GI:6102610; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1324
Score = 34.3 bits (75), Expect = 0.054
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +1
Query: 196 QREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYD 318
Q+ ++ ++ +FR G V++ T + G+D+ +V VI +D
Sbjct: 513 QKIQQAVLEKFRAGGFNVIVATSIGEEGLDIMEVDLVICFD 553
>At5g01710.1 68418.m00088 expressed protein
Length = 513
Score = 33.1 bits (72), Expect = 0.13
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +1
Query: 130 DWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGS 240
DWL +S+ ERDF V M D++ E ++I R +TG+
Sbjct: 426 DWLKKSVRERDFVVMKM--DVEGTEFDLIPRLIKTGA 460
>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
Helicase [Arabidopsis thaliana] GI:10944747
Length = 606
Score = 33.1 bits (72), Expect = 0.13
Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Frame = +1
Query: 70 LYDTLSIAQAVIFCNTRRKVDWLTESMHERDFTVSAM-HGDMDQREREVIMRQFRTGSSR 246
L D +++C ++ + + + ++E+ + H + ++R + R+++TG R
Sbjct: 421 LRDRFKDQSGIVYCLSKSECVDVAKFLNEKCKVKTVYYHAGVPAKQRVDVQRKWQTGEVR 480
Query: 247 VLITTDLLARGIDVQQVSCVINYDLPTNRENY 342
++ T GID V VI+ L E+Y
Sbjct: 481 IVCATIAFGMGIDKADVRFVIHNTLSKAVESY 512
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 32.3 bits (70), Expect = 0.22
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = +1
Query: 268 LARGIDVQQVSCVINYDLPTNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDIEEF 444
+ RGID ++V VIN+D+P + Y + ++ + +DI+ F
Sbjct: 396 VVRGIDFKKVHTVINFDMPQSVTGYIHRIGRTGRAYSSGSSVSLISPDEMEGFEDIKSF 454
>At3g43920.1 68416.m04701 ribonuclease III family protein similar to
RNA helicase/RNAseIII CAF protein [Arabidopsis thaliana]
GI:6102610; contains Pfam profiles PF02170: PAZ domain,
PF00636: RNase3 domain
Length = 1531
Score = 31.9 bits (69), Expect = 0.29
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 226 FRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENY 342
F+ G +L TD++ G V SC++ +DLP +Y
Sbjct: 417 FQHGKVNLLFITDVVEEGFQVPDCSCMVCFDLPKTMCSY 455
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 31.9 bits (69), Expect = 0.29
Identities = 12/45 (26%), Positives = 26/45 (57%)
Frame = +1
Query: 187 DMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDL 321
+M + + + +FR G +L+ T + G+D++Q + V+ +DL
Sbjct: 706 EMKSSQMQDTISKFRDGHVTLLVATSVAEEGLDIRQCNVVMRFDL 750
>At4g32700.1 68417.m04655 DNA-directed DNA polymerase family protein
similar to DNA helicase HEL308 [Homo sapiens]
GI:19110782; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00476: DNA polymerase family A
Length = 1548
Score = 30.3 bits (65), Expect = 0.89
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 169 VSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDV 288
V+ H + ERE++ +R G RVL T LA G+++
Sbjct: 296 VAYHHAGLTVEEREIVETCYRKGLVRVLTATSTLAAGVNL 335
>At1g03950.1 68414.m00380 SNF7 family protein contains Pfam domain,
PF03357: SNF7 family
Length = 210
Score = 30.3 bits (65), Expect = 0.89
Identities = 12/39 (30%), Positives = 28/39 (71%)
Frame = +1
Query: 169 VSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 285
++AM +MD ++ +MR+F+ S+++ +TT++++ ID
Sbjct: 109 MAAMSKNMDPAKQAKVMREFQKQSAQMDMTTEMMSDSID 147
>At3g24340.1 68416.m03056 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|P41410 DNA repair
protein rhp54 (RAD54 homolog) {Schizosaccharomyces
pombe}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1132
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = +1
Query: 178 MHGDMDQREREVIMRQFR---TGSSRVLITTDLLARGIDVQQVSCVINYDLPTN 330
MHG ++QR+R+ ++ F +GS +L +T + GI + S V+ D+ N
Sbjct: 978 MHGKVEQRDRQHMIDNFNKPDSGSKVLLASTKACSEGISLVGASRVVILDVVWN 1031
>At4g34580.1 68417.m04913 SEC14 cytosolic factor, putative /
phosphoglyceride transfer protein, putative similar to
phosphatidylinositol transfer-like protein III
(GI:14486705) [Lotus japonicus]; similar to
phosphatidylinositol transfer-like protein IV
(GI:14486707) [Lotus japonicus]; similar SEC14 protein,
Saccharomyces cerevisiae, PIR2:A30106; contains Pfam
PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
CRAL/TRIO, N-terminus
Length = 560
Score = 28.3 bits (60), Expect = 3.6
Identities = 20/79 (25%), Positives = 33/79 (41%)
Frame = +1
Query: 1 LEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHERDFTVSAM 180
L+ + F A+ L+E L DL+ L +A F + K W +DF +
Sbjct: 63 LQALDAFRQALILDELLPSKLDDLHMMLRFLRARKFDIEKAKQMWSDMIQWRKDFGADTI 122
Query: 181 HGDMDQREREVIMRQFRTG 237
D D E + +M+ + G
Sbjct: 123 IEDFDFEEIDEVMKHYPQG 141
>At1g19394.1 68414.m02414 expressed protein
Length = 72
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -2
Query: 252 EHTRRTSTELPHDHLAFTLVHVTVHGR 172
+H+ +ST + H+HL+ TLV T++ R
Sbjct: 46 DHSHLSSTLVDHNHLSSTLVDPTINAR 72
>At1g05480.1 68414.m00557 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to SP|Q9U7E0
Transcriptional regulator ATRX homolog {Caenorhabditis
elegans}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 588
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 202 EREVIMRQFRTGSSRVLITTDLLARG 279
ER+ I R +R G R++ T L+A+G
Sbjct: 485 ERQAISRAYRIGQKRIVYTYHLVAKG 510
>At4g01020.1 68417.m00137 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1787
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/82 (17%), Positives = 36/82 (43%)
Frame = +1
Query: 67 DLYDTLSIAQAVIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSR 246
+++ T + F ++ +V+W E +HG + E+ ++ + + G +
Sbjct: 514 EIHKTEKEGTILAFLTSQAEVEWACERFVAPSAIALPLHGKLSFEEQFMVFQNY-PGRRK 572
Query: 247 VLITTDLLARGIDVQQVSCVIN 312
V+ T++ + + V VI+
Sbjct: 573 VIFATNIAETSLTIPGVKYVID 594
>At5g57360.1 68418.m07166 F-box family protein / LOV kelch protein 1
(LKP1) E3 ubiquitin ligase SCF complex F-box subunit;
identical to clock-associated PAS protein ZTL; ZEITLUPE
GI:7839456, LOV kelch protein 1 GI:11610573, Adagio 1
GI:13487068 from [Arabidopsis thaliana]; contains Pfam
profile PF01344: Kelch motif; identical to cDNA Adagio 1
(ADO1) GI:13487067; identical to cDNA LKP1 mRNA for LOV
kelch protein 1, GI:11610572
Length = 609
Score = 27.1 bits (57), Expect = 8.3
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = -2
Query: 504 WTPQMRLATSLGIFRNTSVIELLNILERSPVRFR 403
WTP RL +L ++ ++ + + P++FR
Sbjct: 445 WTPPSRLGHTLSVYGGRKILMFGGLAKSGPLKFR 478
>At4g19870.2 68417.m02913 kelch repeat-containing F-box family
protein contains F-box domain Pfam:PF00646 and Kelch
motif Pfam:PF01344
Length = 400
Score = 27.1 bits (57), Expect = 8.3
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = -3
Query: 278 PRASRSVVMSTRDEPVRNCLMITSRSRWSMSPCMADTVKS-RSCIDSVSQSTLRRVLQKI 102
P +S + S DE V NCL SRS + P ++ KS RS I S R L+
Sbjct: 23 PSSSSPSLSSLPDEIVENCLARISRSYY---PTLSIVSKSFRSIISSTELYVARSHLRNT 79
Query: 101 TAC 93
C
Sbjct: 80 EEC 82
>At4g19870.1 68417.m02912 kelch repeat-containing F-box family
protein contains F-box domain Pfam:PF00646 and Kelch
motif Pfam:PF01344
Length = 400
Score = 27.1 bits (57), Expect = 8.3
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = -3
Query: 278 PRASRSVVMSTRDEPVRNCLMITSRSRWSMSPCMADTVKS-RSCIDSVSQSTLRRVLQKI 102
P +S + S DE V NCL SRS + P ++ KS RS I S R L+
Sbjct: 23 PSSSSPSLSSLPDEIVENCLARISRSYY---PTLSIVSKSFRSIISSTELYVARSHLRNT 79
Query: 101 TAC 93
C
Sbjct: 80 EEC 82
>At4g14570.1 68417.m02243 acylaminoacyl-peptidase-related similar to
Acylamino-acid-releasing enzyme (EC 3.4.19.1)
(Acyl-peptide hydrolase) (APH) (Acylaminoacyl-peptidase)
(Swiss-Prot:P13676) [Rattus norvegicus]; annotated with
nonconsensus TT and CT acceptor splice sites.
Length = 764
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = -2
Query: 177 GRHGEVALMHRLGQPVYLTTGVAENNSLCNRECVI*ITQCFQFPFF 40
G HG H +GQ A N +CN ++ IT + FF
Sbjct: 617 GSHGGFLTTHLIGQAPDKFVAAAARNPVCNMASMVGITDIPDWCFF 662
>At2g41800.1 68415.m05166 expressed protein contains Pfam profile
PF04862: Protein of unknown function, DUF642
Length = 370
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 397 FVTEADRRALKDIEEFYHTSISENAQ*CG 483
FV ++DR L FYHT + + CG
Sbjct: 330 FVADSDRTRLTFYSAFYHTKLHDFGHLCG 358
>At2g02040.1 68415.m00139 peptide transporter (PTR2-B) /
oligopeptide transporter 1-1, putative (OPT1-1)
identical to peptide transporter PTR2-B SP:P46032 from
[Arabidopsis thaliana]; contains Pfam profile: PF00854
POT family; identical to cDNA NT1 GI:510237
Length = 585
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +2
Query: 17 NSTLPLS*KNGNWKHCVIYMTHSLLHRLLF 106
N PL K GNWK C + + RL +
Sbjct: 33 NGNPPLKEKTGNWKACPFILGNECCERLAY 62
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,359,755
Number of Sequences: 28952
Number of extensions: 210086
Number of successful extensions: 611
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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