Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_M16
(427 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0216 + 15804110-15804284,15804341-15804351 30 0.90
06_03_0795 - 24683023-24683155,24685853-24686057,24686275-246864... 30 0.90
03_05_0517 - 25118232-25118730,25119002-25119273 28 2.7
03_02_0269 + 7001891-7002212,7003598-7004037 28 2.7
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608... 27 4.8
12_02_0219 + 15822050-15824896 27 6.3
09_02_0511 - 10079180-10079355,10079656-10079722,10080144-100801... 27 8.3
07_03_0202 + 15131001-15131047,15131488-15131754,15131913-151319... 27 8.3
03_02_0260 - 6924532-6924757,6925443-6925546,6925729-6926007,692... 27 8.3
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 27 8.3
>12_02_0216 + 15804110-15804284,15804341-15804351
Length = 61
Score = 29.9 bits (64), Expect = 0.90
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +3
Query: 111 SGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAF 233
SG P+ +H V FF+ SN SGNY + G F
Sbjct: 12 SGSPAPPYKNHTVAGADGWFFNATSNTTSGNYSDWAAGETF 52
>06_03_0795 -
24683023-24683155,24685853-24686057,24686275-24686443,
24686590-24686775,24686916-24687124,24687197-24687362
Length = 355
Score = 29.9 bits (64), Expect = 0.90
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 138 HYCRPMEHHYCPPRELCLRQPW 73
HYCR +E+ YC + L R+ W
Sbjct: 181 HYCRSIENWYCLSKTLAEREAW 202
>03_05_0517 - 25118232-25118730,25119002-25119273
Length = 256
Score = 28.3 bits (60), Expect = 2.7
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +3
Query: 162 DPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRY 272
D FF++ P GN T P VD P P + +
Sbjct: 37 DWFFTRKGESPQGNISKEETAPTGVDVTDPGRPGRAF 73
>03_02_0269 + 7001891-7002212,7003598-7004037
Length = 253
Score = 28.3 bits (60), Expect = 2.7
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2
Query: 297 SHHGREGCRIAWVDNWDD*NRR 232
+ H R+ R+AW D W D +R+
Sbjct: 62 TEHARQRMRVAWADGWVDGSRK 83
>11_04_0321 -
16359390-16359539,16359674-16359746,16360448-16360845,
16360919-16362673,16362751-16362861,16363745-16363962,
16364088-16364196
Length = 937
Score = 27.5 bits (58), Expect = 4.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 255 YPPKRYDNPLARGGK 299
YPPKRY NP+ G+
Sbjct: 859 YPPKRYSNPVGPAGR 873
>12_02_0219 + 15822050-15824896
Length = 948
Score = 27.1 bits (57), Expect = 6.3
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 13 DNSDTIRQ*KLSC-FSSSPYWPWLPQTEFTWWTIVV 117
D D +R+ ++ C F+ P WPWL ++ T+V+
Sbjct: 269 DFGDPLRKHEMHCRFTQGPPWPWLAVAS-SYGTLVI 303
>09_02_0511 -
10079180-10079355,10079656-10079722,10080144-10080181,
10080255-10080336
Length = 120
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 99 VVDNSGVPSDGNSDHVVIANPDPFFSQPSNG 191
+++N+G S GN ++ N PFF SNG
Sbjct: 57 ILNNAGATSKGNYALILPVNEFPFFLVYSNG 87
>07_03_0202 +
15131001-15131047,15131488-15131754,15131913-15131940,
15132120-15132179,15132570-15132696,15132907-15133724
Length = 448
Score = 26.6 bits (56), Expect = 8.3
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = +3
Query: 87 NRVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGP----SGNYEPISTGPAFVDFN 245
NR+HV+D + V I+ PDP +P + P S P + +F +FN
Sbjct: 19 NRLHVLDPPCPSPVAAGEKVSISAPDPISHKPVSRPKVPVSDGNAPNAISKSFFNFN 75
>03_02_0260 -
6924532-6924757,6925443-6925546,6925729-6926007,
6926093-6926368,6926460-6926678,6926758-6926926,
6927208-6927382,6927489-6927600,6929566-6929820
Length = 604
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 99 VVDNSGVPSDGNSDHVVIANPDPFFSQP 182
V++N +P N HVV+ANP P P
Sbjct: 248 VLENCQLPH-ANHGHVVLANPSPILFYP 274
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 26.6 bits (56), Expect = 8.3
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +3
Query: 111 SGVPSD-GNSDHVVIANPDPFF-SQPSNGPSGNYEPIST 221
SG PS GN+ + ++P PF S PS+G SGNY + T
Sbjct: 464 SGSPSHRGNAG--MKSSPSPFAPSGPSSGGSGNYGRLPT 500
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,009,229
Number of Sequences: 37544
Number of extensions: 221547
Number of successful extensions: 562
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -