Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_M15
         (529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    29   0.57 
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    27   1.3  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    26   4.0  
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po...    26   4.0  
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         26   4.0  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   5.3  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    25   7.0  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   9.2  
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc...    25   9.2  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    25   9.2  
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch...    25   9.2  
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    25   9.2  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    25   9.2  

>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 28.7 bits (61), Expect = 0.57
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 109 ILQLSSAMILMDSFYQLLMKFIHNSSLIWTLYLRFI 216
           ++ L+ A  L +  YQ        S  +WTLYL F+
Sbjct: 143 VITLTDAHSLFERAYQTCKFHFSKSQCVWTLYLEFL 178


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = +3

Query: 174 PQFFVNMDTLLKIYRTKMQDGILHDAKAINYGIVKEEEQYVYYANYSNTF 323
           P  F ++D L  +YR+K +D   HD K+    ++ EE+ Y+ ++ + + F
Sbjct: 116 PSQFSSID-LSWVYRSKEEDDDFHDPKSSVVSLMGEED-YLGWSRFCDLF 163


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +3

Query: 186 VNMDTLLKIYRTKMQDGILHDAKAINYGIVKEEEQYVYYANYSNTFLYNNEEQRLTY 356
           +NMD LL  Y TK  D      + +NY ++     Y  + N  ++F+   +++RL +
Sbjct: 289 MNMDILLDSYLTKAMDIHATFIQKLNYDLI--NLLYEPFHNIYSSFIKPIDDRRLEF 343


>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 195 DTLLKIYRTKMQDG-ILHDAKAINYGIVKEEEQYVYYANYS 314
           D  + I R K   G + HD   +NY ++   E++ +  N S
Sbjct: 83  DNFVNIIRRKSGGGTVFHDFGNLNYSVLMNREEFSHTENAS 123


>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 128

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = -3

Query: 332 IVKESVGIVG-VIHI-LLFLFYNSIINSLCIVKN 237
           + KE   I+  +++I ++FLF N +++ +C VKN
Sbjct: 22  VAKEKYKIIHRLLYISIIFLFLNYVVDIVCYVKN 55


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -3

Query: 284 FLFYNSIIN-SLCIVKNTVLHFSAINLK*SVHINEE 180
           FLF N   N SLC  ++T   F  +    S+HI  E
Sbjct: 699 FLFSNGSCNTSLCYYESTDPDFGGLKTPMSIHIERE 734


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +3

Query: 81  NEGQFL-YAYYIAVIQRNDTHG 143
           N G FL YA++  VI+  D+HG
Sbjct: 274 NSGSFLAYAFFSGVIEIYDSHG 295


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 330 NNEEQRLTYLTEDIGFNSYYYYFHSHL 410
           + + Q++ Y+ ++   NSY  Y HSH+
Sbjct: 313 SRKTQKIHYINDNDPSNSYSSYQHSHV 339


>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 364

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +2

Query: 263 LWNCKRGRAVCVLRQLFQH 319
           +WN + G  +C  R+ +QH
Sbjct: 202 IWNSETGEKICEFRRGYQH 220


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 228 QDGILHDAKAINYGIVKEEEQYVYYANYSNTFLYNNEE 341
           Q+ ++   + + +G+V  E ++V     S TFL +NE+
Sbjct: 128 QNILVQVCQPVRHGVVDSETKFVIERKDSFTFLASNEK 165


>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 752

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +3

Query: 288 QYVYYANYSNTFLYNNEEQRLT--YLTEDIGFNSYYYYFHSHLPFWWSSERY 437
           Q  ++   SN  +  N    L+  Y+T D GF S Y Y  S   +  S E +
Sbjct: 265 QNTFFNGKSNPTIDPNSSSLLSEKYITLDKGFPSKYIYSRSLFEYQLSDEDF 316


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
 Frame = +3

Query: 144 FVLPAPYEVYPQFFVNMDTLLKIYRTKMQDGILHDAKAINYGIVKEEEQYVYYANYSNTF 323
           FV+ +    +P F  NMD L K+     + GI  DAK I   +++   +Y+++A     F
Sbjct: 689 FVVSSHIRSHPAFDPNMDVLKKV---PTETGI--DAKPIPQDLLR---KYIHFAR-EKVF 739

Query: 324 --LYNNEEQRLTYLTEDI 371
             L   +E++++ L  D+
Sbjct: 740 PRLQQMDEEKISRLYSDM 757


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 10/51 (19%), Positives = 24/51 (47%)
 Frame = +3

Query: 222 KMQDGILHDAKAINYGIVKEEEQYVYYANYSNTFLYNNEEQRLTYLTEDIG 374
           K  D  L  A+ +      + E Y  + NY + ++  +++   ++  +D+G
Sbjct: 346 KGNDFSLEAAQVLERLSKSDSEAYARFKNYKSAYIPKSDKNENSFFKKDVG 396


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,112,802
Number of Sequences: 5004
Number of extensions: 42839
Number of successful extensions: 117
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)