Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_M13
(441 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p... 27 1.3
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 27 1.3
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 26 2.2
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 26 2.2
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch... 26 3.0
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 26 3.0
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 26 3.0
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 25 3.9
SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|c... 25 3.9
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo... 25 5.2
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 25 5.2
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 25 5.2
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce... 25 6.8
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr... 24 9.0
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr... 24 9.0
SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyc... 24 9.0
>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 252
Score = 27.1 bits (57), Expect = 1.3
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +2
Query: 44 NCRTGLCSRCQRTINWSQHLCLSC 115
+CR G+C C IN S L C
Sbjct: 74 SCREGICGSCAMNINGSNTLACIC 97
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 27.1 bits (57), Expect = 1.3
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +2
Query: 56 GLCSRCQRTINWSQHLCLSCTTT 124
G+C++C+R + W + L TT+
Sbjct: 226 GMCTKCKRVLRWREFLSTVFTTS 248
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 26.2 bits (55), Expect = 2.2
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +2
Query: 80 TINWSQHLCLSCTTTP---RAMGRSYPLYRRAYAGSISCI 190
TI + LC CTT R +GR PL Y G ISC+
Sbjct: 398 TIPCAAVLCFFCTTVGMVLRKLGRYLPL---IYVGYISCV 434
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 26.2 bits (55), Expect = 2.2
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = +2
Query: 11 SLRSTRGCSWCNCR---TGLCSRCQRTINWSQHLCL 109
++R +GC +C CR +G+ C+ W CL
Sbjct: 1089 TIRKKKGCIFCFCRLPESGVMIECEICHEWYHAKCL 1124
>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 25.8 bits (54), Expect = 3.0
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 296 SKRYHPGTNNMLRPSSYSITPILVPSFVQR 207
SK Y PG+N + PSS ++ + + +R
Sbjct: 530 SKGYDPGSNTYVAPSSVNVKDVAIDPHSKR 559
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 25.8 bits (54), Expect = 3.0
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 285 VSLRVTIHSSLQRGSSSNTPYAPIGFS 365
V LR I G+S +TPY PIGF+
Sbjct: 762 VYLRNDIIWKKSPGASEDTPYDPIGFN 788
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 25.8 bits (54), Expect = 3.0
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +2
Query: 266 CCWFPDGIS 292
CCW PDG+S
Sbjct: 302 CCWLPDGLS 310
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.4 bits (53), Expect = 3.9
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = -2
Query: 335 TRTTPLQ*RMDGHSKRYHPGTNNMLRPSSYSITPILVPSFVQRSTVFHIYTKLNRHK 165
TRT L + G+ +Y+P ++ L Y + ++ P + R H+ LN+ K
Sbjct: 1215 TRTRKLNQIIQGNDIKYYPSNSDWLANGKYIMFGMVHPQYHDR----HLILALNKAK 1267
>SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 338
Score = 25.4 bits (53), Expect = 3.9
Identities = 27/105 (25%), Positives = 40/105 (38%)
Frame = +1
Query: 43 QLQDRALFAVPKNYKLVAAPLFELYDNAQGYGPIISSLSQSLCRFNFVYM*NTVERWTKE 222
Q +R + +K + +LY G + SLSQSL F VY T+
Sbjct: 75 QSMEREAIGICTCFKTLNQLHTKLYQQMISSGSPVYSLSQSLPAFRDVYHMYTINLSGIS 134
Query: 223 GTRIGVMEYDDGLSMLLVPGWYLFE*PSIRHCKGVVLVIRPTPLL 357
+ + S LL+P +L P H V ++R P L
Sbjct: 135 AIEKIISDPSSCNSQLLIPLQHLLRYPI--HLARVCKMLRKYPFL 177
>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
Agn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 25.0 bits (52), Expect = 5.2
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Frame = +1
Query: 70 VPKNYKLVAAPLFELYDN----AQGYGP--IISSLSQSLCRFNF 183
+ N PLF++ + AQGYGP I+ + S L FNF
Sbjct: 383 IVNNTAAAGLPLFQILNGTTVIAQGYGPLNILGNNSVVLYNFNF 426
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.0 bits (52), Expect = 5.2
Identities = 15/37 (40%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Frame = -3
Query: 277 EPTTCSGHHRIPSHRS----SCLPSSNAPPCFTYTRN 179
+P CS P HR SCL S N PP RN
Sbjct: 1089 DPNACSNVS--PIHREFGLQSCLASPNLPPSINSNRN 1123
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 25.0 bits (52), Expect = 5.2
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +1
Query: 202 VERWTKEGTRIGVMEYD 252
+E+W K G++IG E+D
Sbjct: 849 LEKWRKMGSKIGTSEWD 865
>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 24.6 bits (51), Expect = 6.8
Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +3
Query: 126 PGLWADHILSIA-ELMPVQFRVYVK 197
P +WA H+L ++ + P+ FR V+
Sbjct: 105 PFIWASHVLDLSVNMTPIFFRYIVR 129
>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 904
Score = 24.2 bits (50), Expect = 9.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 129 GLWADHILSIAELMPVQFRV 188
G+ A HI+S+ +PVQF V
Sbjct: 207 GICAGHIISLVLSLPVQFGV 226
>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
2|||Manual
Length = 539
Score = 24.2 bits (50), Expect = 9.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 303 WSLEEIPSGNQQHAQAII 250
W++ I +GN Q QAII
Sbjct: 354 WTISNITAGNTQQIQAII 371
>SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 24.2 bits (50), Expect = 9.0
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +1
Query: 40 VQLQDRALFAVPKNYKLVAAPLFELYDNAQGYGPIISS 153
++L D L + K + A L + +GY PII S
Sbjct: 202 IRLNDEKLVPIAKKLNISVAQLLIRWSLQKGYIPIIKS 239
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,967,579
Number of Sequences: 5004
Number of extensions: 42925
Number of successful extensions: 147
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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