Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_M13
(441 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965... 91 4e-19
08_02_0586 - 19024584-19024655,19024745-19024855,19024967-190250... 56 1e-08
12_02_0991 + 25079293-25079925,25080221-25081116,25081721-25082003 32 0.23
05_02_0030 + 5826065-5826092,5826307-5828309,5828412-5828732,582... 29 2.2
03_05_0710 + 27038709-27038865,27039205-27039346,27039383-270395... 29 2.2
09_02_0082 - 4060018-4061604 28 2.9
10_05_0006 + 7752426-7752497,7752663-7753223 27 5.1
07_03_0318 - 16721615-16722154 27 5.1
03_01_0403 - 3133568-3134440,3135131-3135494,3136341-3136408,313... 27 6.7
02_05_0980 - 33271879-33271934,33272031-33272100,33272194-332723... 27 6.7
10_05_0056 + 8635567-8635782,8636275-8637006,8637088-8637531,863... 27 8.8
04_04_1650 - 35051728-35051823,35052054-35052162,35052270-350524... 27 8.8
01_06_0212 + 27575406-27575604,27575723-27576241,27576371-27576387 27 8.8
>04_04_1630 -
34896021-34896143,34896329-34896403,34896500-34896556,
34897176-34897352,34897426-34897492,34898043-34898101,
34898188-34898241,34898455-34898604,34898709-34898918,
34898980-34899039,34899399-34899527,34899616-34899720,
34899935-34900024,34900630-34900695,34901047-34901115,
34901348-34901467,34901572-34901634,34901681-34901817,
34902070-34902160,34902298-34902463,34902700-34904172,
34905666-34905940,34906322-34906819,34906996-34907145,
34907840-34907911,34908006-34908266,34908478-34908558,
34908745-34908996,34909323-34909382,34909602-34909853,
34910385-34910549,34910589-34910849,34911267-34912307,
34913398-34913457,34914055-34914165,34914448-34914534,
34915227-34915300,34915397-34915490,34915644-34915689,
34916397-34916521
Length = 2501
Score = 91.1 bits (216), Expect = 4e-19
Identities = 40/61 (65%), Positives = 48/61 (78%)
Frame = +1
Query: 1 HITKPKEHKRLFLVQLQDRALFAVPKNYKLVAAPLFELYDNAQGYGPIISSLSQSLCRFN 180
HITKPKE K+LF+V L +R FAVP+N KL+A PLFELYDN Q YGP+IS++ Q L RF
Sbjct: 137 HITKPKECKKLFIVHLSEREYFAVPRNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQ 196
Query: 181 F 183
F
Sbjct: 197 F 197
>08_02_0586 -
19024584-19024655,19024745-19024855,19024967-19025053,
19025154-19025245,19025456-19025595,19025689-19025867
Length = 226
Score = 56.4 bits (130), Expect = 1e-08
Identities = 26/56 (46%), Positives = 38/56 (67%)
Frame = +1
Query: 13 PKEHKRLFLVQLQDRALFAVPKNYKLVAAPLFELYDNAQGYGPIISSLSQSLCRFN 180
PKE +LFL++L F VP+N KL+A PL +++DNAQ YG II+ + L +F+
Sbjct: 165 PKECIKLFLIKLPVSRQFVVPRNMKLLAVPLSQIHDNAQVYGSIIAGIPNLLSKFS 220
>12_02_0991 + 25079293-25079925,25080221-25081116,25081721-25082003
Length = 603
Score = 31.9 bits (69), Expect = 0.23
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 123 VVVQLKQRCCDQFIVLWHREQSPVLQLHQEQPL 25
V + + QR CD F+ LW QS + +LH + P+
Sbjct: 362 VEILVNQRICDDFVALW-ANQSKIAELHGKLPV 393
>05_02_0030 +
5826065-5826092,5826307-5828309,5828412-5828732,
5828821-5828907,5828981-5829583,5829680-5829844,
5829941-5830235,5830320-5830534,5830621-5830926,
5831200-5831263,5831384-5831623,5831756-5831853
Length = 1474
Score = 28.7 bits (61), Expect = 2.2
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Frame = -1
Query: 150 GYDRPIALGVVVQLKQ-----RCCDQFIVLWHREQS 58
GY +P+ LG V L + CD F+ WHR +S
Sbjct: 238 GYSKPLGLGDVPPLDADDEAAQACDTFLREWHRRRS 273
>03_05_0710 +
27038709-27038865,27039205-27039346,27039383-27039558,
27039639-27039703,27040000-27040371,27040429-27040504,
27040505-27040571,27040672-27040825,27041122-27041289,
27041392-27041502,27041612-27041722,27041864-27041881,
27041917-27042018,27042587-27042817,27043390-27043464,
27043744-27043815,27044597-27044782,27044868-27045026,
27045251-27045343,27045730-27045801,27046336-27046426,
27046669-27046847,27047252-27047333,27047526-27047636,
27047715-27047821,27048194-27048271,27048357-27048452,
27048627-27048722,27048839-27048856
Length = 1154
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 197 FHIYTKLNRHKLCDREDMIGP*PWALSYNSNRG 99
F +YT+L + DRED+I P P Y G
Sbjct: 888 FQVYTQLVTGPIVDREDLIPPVPVLTRYKKELG 920
>09_02_0082 - 4060018-4061604
Length = 528
Score = 28.3 bits (60), Expect = 2.9
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = -3
Query: 220 PSSNAPPCFTYTRN*TGISSAIERI*SAHSPGRCRTTQTEVLRPVYSSLAPRTEPCPAIA 41
P ++ PP FT + T S + S+ + R RTT + P PR P A
Sbjct: 202 PPADVPPGFTVSPTITRYSFGYDGASSSSATPRVRTTSLALRAPAPHLRVPRAPAPPVPA 261
Query: 40 P 38
P
Sbjct: 262 P 262
>10_05_0006 + 7752426-7752497,7752663-7753223
Length = 210
Score = 27.5 bits (58), Expect = 5.1
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +2
Query: 17 RSTRGCSWCNCRTG-LCSRCQRTINWSQHLCLSCTTTPRAMGR 142
+ TRGCSWC + G S C + + + L + + R G+
Sbjct: 157 KCTRGCSWCGLKDGHNVSTCPKNPSNFERLAAASSRGKRKSGQ 199
>07_03_0318 - 16721615-16722154
Length = 179
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/51 (27%), Positives = 20/51 (39%)
Frame = -3
Query: 172 GISSAIERI*SAHSPGRCRTTQTEVLRPVYSSLAPRTEPCPAIAPGTASCA 20
G +S + H+PG T +AP P PA++P A A
Sbjct: 84 GATSVTTGLHEYHAPGMVATAGAPAPAGTADKVAPLGTPAPAVSPAAAGTA 134
>03_01_0403 -
3133568-3134440,3135131-3135494,3136341-3136408,
3137184-3137857,3138093-3138105
Length = 663
Score = 27.1 bits (57), Expect = 6.7
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 173 GSISCICETRWSVGRRKARGSV*WNTMMA*ACCWFPD 283
G++S +GR ARG W+ + CWF D
Sbjct: 90 GAVSPDASYVGGLGRGVARGGAPWSRLAVYKVCWFKD 126
>02_05_0980 -
33271879-33271934,33272031-33272100,33272194-33272355,
33272787-33272895,33273350-33273608,33274193-33274272,
33274370-33274499,33274676-33274793,33275222-33275302,
33275510-33275827,33277490-33277741
Length = 544
Score = 27.1 bits (57), Expect = 6.7
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 114 QLKQRCCDQFIVLWHREQSPVLQLHQEQPLVLL 16
Q+ + C F V+ R + + +H EQ +VLL
Sbjct: 422 QIPENCSSAFDVICQRMEQRMAYIHNEQDMVLL 454
>10_05_0056 +
8635567-8635782,8636275-8637006,8637088-8637531,
8637618-8637665,8637706-8638505,8638584-8638754,
8638837-8639125,8639211-8639249,8639355-8639393
Length = 925
Score = 26.6 bits (56), Expect = 8.8
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -3
Query: 142 SAHSPGRCRTTQTEVLRPVYSSLAPRTEPCPAIAPGTAS 26
+AH C T + + P A TEP + PGTAS
Sbjct: 16 AAHPTPTCPTANSSIAEPA----AAATEPAASTEPGTAS 50
>04_04_1650 -
35051728-35051823,35052054-35052162,35052270-35052416,
35052516-35052637,35052726-35052825,35052895-35053095,
35053202-35053407,35053778-35053803,35054239-35054327,
35054427-35054635,35055577-35055672,35055754-35055924
Length = 523
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 147 ILSIAELMPVQFRVYVKHGGALDEGRH 227
IL IAE++ +R ++KH G L E H
Sbjct: 437 ILMIAEILLPAYRSFLKHFGPLVENSH 463
>01_06_0212 + 27575406-27575604,27575723-27576241,27576371-27576387
Length = 244
Score = 26.6 bits (56), Expect = 8.8
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -3
Query: 328 LPLCSDEWMVTRRDTIREPTTCSGHHRIPSHRSSCLPSSNAP 203
LPL S E ++ EP H R + RSS +P +AP
Sbjct: 132 LPLSSGELLIGASSPYDEPPLPPVHSRRGAGRSSAVPRLSAP 173
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,328,976
Number of Sequences: 37544
Number of extensions: 306456
Number of successful extensions: 885
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -