Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_M13
(441 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10060| Best HMM Match : SAP (HMM E-Value=0.016) 32 0.18
SB_7214| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.56
SB_11116| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_33015| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_4329| Best HMM Match : E2F_TDP (HMM E-Value=3.6e-10) 29 2.2
SB_43183| Best HMM Match : MethyltransfD12 (HMM E-Value=2) 28 3.9
SB_52772| Best HMM Match : rve (HMM E-Value=0.001) 27 5.2
SB_10489| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.2
SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11) 27 5.2
SB_45713| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.2
SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.2
SB_11642| Best HMM Match : LIM (HMM E-Value=1.4) 27 5.2
SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41) 27 6.9
SB_3031| Best HMM Match : NblA (HMM E-Value=8.4) 27 6.9
SB_29611| Best HMM Match : DED (HMM E-Value=6.5) 27 6.9
SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0) 27 9.1
>SB_10060| Best HMM Match : SAP (HMM E-Value=0.016)
Length = 332
Score = 32.3 bits (70), Expect = 0.18
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -3
Query: 310 EWMVTRRDTIREPTTC-SGHHRIPSHRSSCLPSSNAPPCFTYTR 182
+W++ C SG HR+ +HRS C+ +N CF + R
Sbjct: 241 KWVIAYTRPFHRSEDCPSGQHRLATHRSPCIHCNNV--CFDFNR 282
>SB_7214| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 505
Score = 30.7 bits (66), Expect = 0.56
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -3
Query: 313 DEWMVTRRDTIREPTTCSGHHRIPSHRSSCLPSSNAPPCFTYT 185
D +++ IR P+T H R+PS + S + + P FTYT
Sbjct: 344 DSPRLSQHSHIRLPSTQHSHIRLPSTQHSHIRIPSTQPAFTYT 386
>SB_11116| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1661
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 262 SGHHRIPSHRSSCLPSSNAPPCFTYTR 182
SG HR+ +HRS +P +N CF + R
Sbjct: 575 SGQHRLATHRSPRIPRNNV--CFDFNR 599
>SB_33015| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 659
Score = 28.7 bits (61), Expect = 2.2
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Frame = -2
Query: 299 HSKRYHPGTNNMLRPSS--------YSITPILVPSFVQRSTVFHIYTKLNRHKLCDREDM 144
HS R GTN + +S Y + PI+ P++ Q+++ F++ + R +CD E
Sbjct: 168 HSVREQSGTNRLTNGNSYLTNPGDRYHLMPIITPAYPQQNSTFNV-SMSTRKIMCD-EFF 225
Query: 143 IG 138
IG
Sbjct: 226 IG 227
>SB_4329| Best HMM Match : E2F_TDP (HMM E-Value=3.6e-10)
Length = 496
Score = 28.7 bits (61), Expect = 2.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 196 NTVERWTKEGTRIGVMEYDDGL 261
N E W + RIG+M+YD GL
Sbjct: 386 NQPEYWPNDMARIGLMDYDSGL 407
>SB_43183| Best HMM Match : MethyltransfD12 (HMM E-Value=2)
Length = 604
Score = 27.9 bits (59), Expect = 3.9
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -3
Query: 268 TCSGHHRIPSHRSSCLPSSNAPPCFT 191
T H RI S RS+ LP N P C T
Sbjct: 246 TFENHRRISSKRSAFLPQINYPVCNT 271
>SB_52772| Best HMM Match : rve (HMM E-Value=0.001)
Length = 646
Score = 27.5 bits (58), Expect = 5.2
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -3
Query: 124 RCRTTQTEVLRPVYSSLAPRTEPCPAIAPGTASC 23
R R + + +LRP+++ + P+ P A+ G SC
Sbjct: 164 RGRWSSSVILRPLHTGMDPKNIPFNALIVGPTSC 197
>SB_10489| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 185
Score = 27.5 bits (58), Expect = 5.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 239 TPILVPSFVQRSTVFHIYT 183
TPI PS+ R T+ H+YT
Sbjct: 71 TPIPTPSYTYRHTLLHLYT 89
>SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11)
Length = 1012
Score = 27.5 bits (58), Expect = 5.2
Identities = 20/68 (29%), Positives = 30/68 (44%)
Frame = -3
Query: 220 PSSNAPPCFTYTRN*TGISSAIERI*SAHSPGRCRTTQTEVLRPVYSSLAPRTEPCPAIA 41
P++ APP + T IS++ + +PG TT V P +P+T PA
Sbjct: 870 PTTVAPPMTSGPTTTTPISTSAAPEITTANPGSPSTTTKSVTTP---QTSPKTPQTPATL 926
Query: 40 PGTASCAP 17
P T + P
Sbjct: 927 PTTQTPEP 934
>SB_45713| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 702
Score = 27.5 bits (58), Expect = 5.2
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 82 SSLAPRTEPCPAIAPGTAS 26
SS P TEPCPA + T+S
Sbjct: 599 SSFNPGTEPCPAFSSATSS 617
>SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 886
Score = 27.5 bits (58), Expect = 5.2
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = -3
Query: 310 EWMVTRRDTIREPTTCSGHHRIPSH----RSSCLPSSNAPP 200
E++ T+R T ++ SGH H RS C+ S +PP
Sbjct: 29 EFLRTKRSTCKDFVPISGHVSTSGHDSIVRSLCITSQRSPP 69
>SB_11642| Best HMM Match : LIM (HMM E-Value=1.4)
Length = 906
Score = 27.5 bits (58), Expect = 5.2
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 127 GRCRTTQTEVLRPVYSSLAPRTEPCPAIAPGTASCAP 17
G+C QT+VLR + LA T PC + G P
Sbjct: 655 GKCCKVQTKVLRAILGYLA--TRPCQVVCCGDYGQVP 689
>SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41)
Length = 1487
Score = 27.1 bits (57), Expect = 6.9
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +2
Query: 68 RCQRTINWSQHLCLSCTTTPRAMGRSYPLYRR 163
+ +RT NW HL L+ P P Y R
Sbjct: 398 KAERTGNWELHLALTAAMIPHFFSMDRPNYSR 429
>SB_3031| Best HMM Match : NblA (HMM E-Value=8.4)
Length = 256
Score = 27.1 bits (57), Expect = 6.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -2
Query: 281 PGTNNMLRPSSYSITPILVPSFVQRSTVFH 192
P TN+ +P+ S++P+L P + RS FH
Sbjct: 180 PDTNSCTKPAMSSLSPLL-PLLMLRSVSFH 208
>SB_29611| Best HMM Match : DED (HMM E-Value=6.5)
Length = 486
Score = 27.1 bits (57), Expect = 6.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -2
Query: 281 PGTNNMLRPSSYSITPILVPSFVQRSTVFH 192
P TN+ +P+ S++P+L P + RS FH
Sbjct: 168 PDTNSCTKPAMSSLSPLL-PLLMLRSVSFH 196
>SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0)
Length = 1227
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = -3
Query: 139 AHSPGRCRTTQTEVLRPVYSSLAPRTEPCPAIAPGTASCAP 17
+HSP + ++ +PV AP PC P +C P
Sbjct: 758 SHSPFQ-PISRVSPFQPVTGPAAPSPVPCNTTVPSAVACVP 797
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,411,911
Number of Sequences: 59808
Number of extensions: 357065
Number of successful extensions: 1092
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -