Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_M13
(441 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BX537360-1|CAD97606.1| 227|Homo sapiens hypothetical protein pr... 121 1e-27
CR456919-1|CAG33200.1| 227|Homo sapiens CPSF5 protein. 120 2e-27
BC001403-1|AAH01403.1| 227|Homo sapiens nudix (nucleoside dipho... 120 2e-27
AJ001810-1|CAA05026.1| 227|Homo sapiens pre-mRNA cleavage facto... 120 2e-27
U59299-1|AAC52013.1| 505|Homo sapiens MCT protein. 29 7.1
M33782-1|AAA36730.1| 508|Homo sapiens protein ( Human TFEB prot... 29 7.1
BC111991-1|AAI11992.1| 558|Homo sapiens Shaw-related voltage-ga... 29 7.1
BC093635-1|AAH93635.1| 558|Homo sapiens potassium voltage-gated... 29 7.1
BC033611-1|AAH33611.1| 505|Homo sapiens solute carrier family 1... 29 7.1
BC009684-1|AAH09684.1| 505|Homo sapiens solute carrier family 1... 29 7.1
AY243473-1|AAO89503.1| 629|Homo sapiens Kv3.2d voltage-gated po... 29 7.1
AY118169-1|AAM81577.1| 638|Homo sapiens potassium voltage-gated... 29 7.1
AK094720-1|BAC04407.1| 558|Homo sapiens protein ( Homo sapiens ... 29 7.1
AF268897-1|AAL27273.1| 613|Homo sapiens voltage gated potassium... 29 7.1
AF268896-1|AAL27272.1| 638|Homo sapiens voltage gated potassium... 29 7.1
AB209994-1|BAE06076.1| 641|Homo sapiens KCNC2 variant protein p... 29 7.1
>BX537360-1|CAD97606.1| 227|Homo sapiens hypothetical protein
protein.
Length = 227
Score = 121 bits (291), Expect = 1e-27
Identities = 55/63 (87%), Positives = 59/63 (93%)
Frame = +1
Query: 1 HITKPKEHKRLFLVQLQDRALFAVPKNYKLVAAPLFELYDNAQGYGPIISSLSQSLCRFN 180
HITKPKEHK+LFLVQLQ++ALFAVPKNYKLVAAPLFELYDNA GYGPIISSL Q L RFN
Sbjct: 164 HITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQPLSRFN 223
Query: 181 FVY 189
F+Y
Sbjct: 224 FIY 226
>CR456919-1|CAG33200.1| 227|Homo sapiens CPSF5 protein.
Length = 227
Score = 120 bits (290), Expect = 2e-27
Identities = 55/63 (87%), Positives = 59/63 (93%)
Frame = +1
Query: 1 HITKPKEHKRLFLVQLQDRALFAVPKNYKLVAAPLFELYDNAQGYGPIISSLSQSLCRFN 180
HITKPKEHK+LFLVQLQ++ALFAVPKNYKLVAAPLFELYDNA GYGPIISSL Q L RFN
Sbjct: 164 HITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFN 223
Query: 181 FVY 189
F+Y
Sbjct: 224 FIY 226
>BC001403-1|AAH01403.1| 227|Homo sapiens nudix (nucleoside
diphosphate linked moiety X)-type motif 21 protein.
Length = 227
Score = 120 bits (290), Expect = 2e-27
Identities = 55/63 (87%), Positives = 59/63 (93%)
Frame = +1
Query: 1 HITKPKEHKRLFLVQLQDRALFAVPKNYKLVAAPLFELYDNAQGYGPIISSLSQSLCRFN 180
HITKPKEHK+LFLVQLQ++ALFAVPKNYKLVAAPLFELYDNA GYGPIISSL Q L RFN
Sbjct: 164 HITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFN 223
Query: 181 FVY 189
F+Y
Sbjct: 224 FIY 226
>AJ001810-1|CAA05026.1| 227|Homo sapiens pre-mRNA cleavage factor I
25 kDa subunit protein.
Length = 227
Score = 120 bits (290), Expect = 2e-27
Identities = 55/63 (87%), Positives = 59/63 (93%)
Frame = +1
Query: 1 HITKPKEHKRLFLVQLQDRALFAVPKNYKLVAAPLFELYDNAQGYGPIISSLSQSLCRFN 180
HITKPKEHK+LFLVQLQ++ALFAVPKNYKLVAAPLFELYDNA GYGPIISSL Q L RFN
Sbjct: 164 HITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFN 223
Query: 181 FVY 189
F+Y
Sbjct: 224 FIY 226
>U59299-1|AAC52013.1| 505|Homo sapiens MCT protein.
Length = 505
Score = 29.1 bits (62), Expect = 7.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 100 VLRPVYSSLAPRTEPCPAIAPGT 32
++RPV +S+AP T+ CP P T
Sbjct: 188 IIRPVATSVAPETKECPPPPPET 210
>M33782-1|AAA36730.1| 508|Homo sapiens protein ( Human TFEB protein
mRNA, partial cds. ).
Length = 508
Score = 29.1 bits (62), Expect = 7.1
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +3
Query: 18 GAQEAVPGAIAGQGSVRGA---KEL*TGRSTSV*VVRQRPGLWADHIL 152
G+ A A AG+GS RGA +E TGR++ V R RPG H L
Sbjct: 13 GSVTAEAAARAGRGSGRGADGGREGRTGRASLVARGRSRPGAGGGHSL 60
>BC111991-1|AAI11992.1| 558|Homo sapiens Shaw-related voltage-gated
potassium channel protein 2, isoform KV3.2c protein.
Length = 558
Score = 29.1 bits (62), Expect = 7.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 142 SAHSPGRCRTTQTEVLRPVYSSLAPRTEPCPAIAPGTASC 23
S+ PG C TT + L+P L+P P ++PG C
Sbjct: 39 SSEPPGDCLTTAGDKLQPSPPPLSPPPR-APPLSPGPGGC 77
>BC093635-1|AAH93635.1| 558|Homo sapiens potassium voltage-gated
channel, Shaw-related subfamily, member 2 protein.
Length = 558
Score = 29.1 bits (62), Expect = 7.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 142 SAHSPGRCRTTQTEVLRPVYSSLAPRTEPCPAIAPGTASC 23
S+ PG C TT + L+P L+P P ++PG C
Sbjct: 39 SSEPPGDCLTTAGDKLQPSPPPLSPPPR-APPLSPGPGGC 77
>BC033611-1|AAH33611.1| 505|Homo sapiens solute carrier family 16,
member 5 (monocarboxylic acid transporter 6) protein.
Length = 505
Score = 29.1 bits (62), Expect = 7.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 100 VLRPVYSSLAPRTEPCPAIAPGT 32
++RPV +S+AP T+ CP P T
Sbjct: 188 IIRPVATSVAPETKECPPPPPET 210
>BC009684-1|AAH09684.1| 505|Homo sapiens solute carrier family 16,
member 5 (monocarboxylic acid transporter 6) protein.
Length = 505
Score = 29.1 bits (62), Expect = 7.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 100 VLRPVYSSLAPRTEPCPAIAPGT 32
++RPV +S+AP T+ CP P T
Sbjct: 188 IIRPVATSVAPETKECPPPPPET 210
>AY243473-1|AAO89503.1| 629|Homo sapiens Kv3.2d voltage-gated
potassium channel protein.
Length = 629
Score = 29.1 bits (62), Expect = 7.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 142 SAHSPGRCRTTQTEVLRPVYSSLAPRTEPCPAIAPGTASC 23
S+ PG C TT + L+P L+P P ++PG C
Sbjct: 39 SSEPPGDCLTTAGDKLQPSPPPLSPPPR-APPLSPGPGGC 77
>AY118169-1|AAM81577.1| 638|Homo sapiens potassium voltage-gated
potassium channel subfamily C member 2 protein.
Length = 638
Score = 29.1 bits (62), Expect = 7.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 142 SAHSPGRCRTTQTEVLRPVYSSLAPRTEPCPAIAPGTASC 23
S+ PG C TT + L+P L+P P ++PG C
Sbjct: 39 SSEPPGDCLTTAGDKLQPSPPPLSPPPR-APPLSPGPGGC 77
>AK094720-1|BAC04407.1| 558|Homo sapiens protein ( Homo sapiens
cDNA FLJ37401 fis, clone BRAMY2027717, highly similar to
VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV3.2. ).
Length = 558
Score = 29.1 bits (62), Expect = 7.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 142 SAHSPGRCRTTQTEVLRPVYSSLAPRTEPCPAIAPGTASC 23
S+ PG C TT + L+P L+P P ++PG C
Sbjct: 39 SSEPPGDCLTTAGDKLQPSPPPLSPPPR-APPLSPGPGGC 77
>AF268897-1|AAL27273.1| 613|Homo sapiens voltage gated potassium
channel Kv3.2a protein.
Length = 613
Score = 29.1 bits (62), Expect = 7.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 142 SAHSPGRCRTTQTEVLRPVYSSLAPRTEPCPAIAPGTASC 23
S+ PG C TT + L+P L+P P ++PG C
Sbjct: 39 SSEPPGDCLTTAGDKLQPSPPPLSPPPR-APPLSPGPGGC 77
>AF268896-1|AAL27272.1| 638|Homo sapiens voltage gated potassium
channel Kv3.2b protein.
Length = 638
Score = 29.1 bits (62), Expect = 7.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 142 SAHSPGRCRTTQTEVLRPVYSSLAPRTEPCPAIAPGTASC 23
S+ PG C TT + L+P L+P P ++PG C
Sbjct: 39 SSEPPGDCLTTAGDKLQPSPPPLSPPPR-APPLSPGPGGC 77
>AB209994-1|BAE06076.1| 641|Homo sapiens KCNC2 variant protein
protein.
Length = 641
Score = 29.1 bits (62), Expect = 7.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 142 SAHSPGRCRTTQTEVLRPVYSSLAPRTEPCPAIAPGTASC 23
S+ PG C TT + L+P L+P P ++PG C
Sbjct: 42 SSEPPGDCLTTAGDKLQPSPPPLSPPPR-APPLSPGPGGC 80
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,731,599
Number of Sequences: 237096
Number of extensions: 1715452
Number of successful extensions: 4515
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4510
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3602345922
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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