Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_M13
(441 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g25550.1 68417.m03683 expressed protein 91 2e-19
At4g29820.1 68417.m04245 expressed protein 64 3e-11
At3g47220.1 68416.m05127 phosphoinositide-specific phospholipase... 30 0.80
At3g14520.1 68416.m01840 terpene synthase/cyclase family protein... 28 3.2
At2g09840.1 68415.m01018 hypothetical protein 27 4.2
At1g56160.1 68414.m06452 myb family transcription factor (MYB72)... 27 4.2
At5g65460.1 68418.m08232 kinesin motor protein-related contains ... 27 5.6
At5g19660.1 68418.m02339 subtilase family protein contains Pfam ... 27 5.6
At4g19180.1 68417.m02830 nucleoside phosphatase family protein /... 27 5.6
At5g59800.1 68418.m07497 methyl-CpG-binding domain-containing pr... 27 7.4
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 27 7.4
At5g51660.1 68418.m06405 cleavage and polyadenylation specificit... 27 7.4
At1g31950.1 68414.m03927 terpene synthase/cyclase family protein... 27 7.4
At5g58540.1 68418.m07330 protein kinase family protein contains ... 26 9.8
At4g17360.1 68417.m02603 formyltetrahydrofolate deformylase, put... 26 9.8
At3g04580.2 68416.m00487 ethylene receptor, putative (EIN4) simi... 26 9.8
At3g04580.1 68416.m00486 ethylene receptor, putative (EIN4) simi... 26 9.8
At1g32050.1 68414.m03943 secretory carrier membrane protein (SCA... 26 9.8
>At4g25550.1 68417.m03683 expressed protein
Length = 200
Score = 91.5 bits (217), Expect = 2e-19
Identities = 40/61 (65%), Positives = 49/61 (80%)
Frame = +1
Query: 1 HITKPKEHKRLFLVQLQDRALFAVPKNYKLVAAPLFELYDNAQGYGPIISSLSQSLCRFN 180
HITKPKE KRL++V L ++ FAVPKN KL+A PLFELYDN Q YGP+IS++ Q L RF+
Sbjct: 135 HITKPKECKRLYIVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFH 194
Query: 181 F 183
F
Sbjct: 195 F 195
>At4g29820.1 68417.m04245 expressed protein
Length = 222
Score = 64.5 bits (150), Expect = 3e-11
Identities = 30/64 (46%), Positives = 44/64 (68%)
Frame = +1
Query: 1 HITKPKEHKRLFLVQLQDRALFAVPKNYKLVAAPLFELYDNAQGYGPIISSLSQSLCRFN 180
+I PKE +LFLV+L F VPKN+KL+A PL +L++N + YGPI+S + + L +F+
Sbjct: 157 NIKHPKECTKLFLVRLPVHQQFVVPKNFKLLAVPLCQLHENEKTYGPIMSQIPKLLSKFS 216
Query: 181 FVYM 192
F M
Sbjct: 217 FNMM 220
>At3g47220.1 68416.m05127 phosphoinositide-specific phospholipase C
family protein contains Pfam profile: PF00388
phosphatidylinositol-specific phospholipase C
Length = 531
Score = 29.9 bits (64), Expect = 0.80
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -1
Query: 327 YPFAVTNGWSLEEIPSGNQQHAQAIIVFHHTDPRAFLRPTL 205
Y AV NG LE ++ Q+++ FH +PR L+ L
Sbjct: 260 YAKAVENGVELEIQEGSTDKNYQSVVGFHAVEPRGMLQKAL 300
>At3g14520.1 68416.m01840 terpene synthase/cyclase family protein
similar to terpene synthase GB:CAA72074 from
[Arabidopsis thaliana]
Length = 605
Score = 27.9 bits (59), Expect = 3.2
Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +1
Query: 88 LVAAPLFELYDNAQGYGPII---SSLSQSLCRFNFVYM*NTVERWTKE 222
LVA Y+ +G+ I+ + L+ + C+F+++ T+ +W K+
Sbjct: 261 LVAREYISYYEQEEGHNKILLKFAKLNFNFCQFHYIQELKTLTKWWKD 308
>At2g09840.1 68415.m01018 hypothetical protein
Length = 163
Score = 27.5 bits (58), Expect = 4.2
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -3
Query: 319 CSDEWMVTRRDTIREPTTCSGHHRIPSHRSSCLP-SSNAPPCF 194
C DE ++T T+ + GH + H +P SS+A P F
Sbjct: 6 CEDECVITGVRTVEQELALKGHEIVMVHVYVSVPTSSSATPSF 48
>At1g56160.1 68414.m06452 myb family transcription factor (MYB72)
contains Pfam profile: PF00249 myb-like DNA-binding
domain; identical to cDNA putative transcription factor
(MYB72) mRNA, partial cds GI:3941501
Length = 296
Score = 27.5 bits (58), Expect = 4.2
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -1
Query: 294 EEIPSGNQQHAQAIIVFHHTDPRAFLRPTLHRVSHIHEIE 175
EEI SG + + HH +P LH V+ ++EI+
Sbjct: 148 EEIHSGLNESQNSATSSHHQGECMHTKPELHEVNGLNEIQ 187
>At5g65460.1 68418.m08232 kinesin motor protein-related contains
similarity to kinesin heavy chain
Length = 1281
Score = 27.1 bits (57), Expect = 5.6
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -3
Query: 307 WMVTRRDTIREPTTCSGHHRIPSH--RSSCLPSSNAPP 200
W VT ++ + P++ G HR PS R +P ++ PP
Sbjct: 12 WEVTGFESKKSPSSEEGVHRTPSSMLRRYSIPKNSLPP 49
>At5g19660.1 68418.m02339 subtilase family protein contains Pfam
profile: PF00082 subtilase family
Length = 1038
Score = 27.1 bits (57), Expect = 5.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 80 TINWSQHLCLSCTTTPRAMGRSYPLYRRAYAGS 178
T+NWS+HL T G + L+++ Y G+
Sbjct: 173 TLNWSRHLLAQKTQVTSMFGADH-LWKKGYTGA 204
>At4g19180.1 68417.m02830 nucleoside phosphatase family protein /
GDA1/CD39 family protein low similarity to SP|O18956
Ectonucleoside triphosphate diphosphohydrolase 1 (EC
3.6.1.5) (Ecto-apyrase) {Bos taurus}; contains Pfam
profile PF01150: GDA1/CD39 (nucleoside phosphatase)
family
Length = 740
Score = 27.1 bits (57), Expect = 5.6
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +3
Query: 267 VVGSRMVSLRVTIHSSLQRGSSSNTPYAPIGFSMPD 374
+V R+ L S L GS S+ PY P G S PD
Sbjct: 1 MVFGRITELFTAASSRLPAGSQSSVPYMPTG-SSPD 35
>At5g59800.1 68418.m07497 methyl-CpG-binding domain-containing
protein contains Pfam profile PF01429: Methyl-CpG
binding domain
Length = 306
Score = 26.6 bits (56), Expect = 7.4
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -1
Query: 321 FAVTNGWSLEEIPSGNQQHAQAIIVFHHTDPR 226
F + GWS+EE+P N + V T R
Sbjct: 114 FRLPRGWSVEEVPRKNSHYIDKYYVERKTGKR 145
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 26.6 bits (56), Expect = 7.4
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +2
Query: 14 LRSTRGCSWCNCRTGLCSRCQRTINWSQH-LCLSC 115
++ GC C+ +T + C W ++ +CL C
Sbjct: 70 MKPGEGCFICHSKTHIAKLCPEKSEWERNKICLQC 104
>At5g51660.1 68418.m06405 cleavage and polyadenylation specificity
factor (CPSF) A subunit C-terminal domain-containing
protein similar to SP|Q9EPU4 Cleavage and
polyadenylation specificity factor, 160 kDa subunit
(CPSF 160 kDa subunit) {Mus musculus}; contains Pfam
profile PF03178: CPSF A subunit region
Length = 1442
Score = 26.6 bits (56), Expect = 7.4
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 214 TKEGTRIGVMEYDDGLSMLLVPGWYLFE*PSIRHCK 321
T +I V+E+DD + L + + FE P H K
Sbjct: 139 TFRDAKISVLEFDDSIHSLRMTSMHCFEGPDWLHLK 174
>At1g31950.1 68414.m03927 terpene synthase/cyclase family protein
similar to sesquiterpene synthases
[GI:11934937][Lycopersicon hirsutum],
[GI:11934933][Lycopersicon esculentum]; contains Pfam
profile: PF01397: Terpene synthase family
Length = 606
Score = 26.6 bits (56), Expect = 7.4
Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +1
Query: 88 LVAAPLFELYDNAQGYGPII---SSLSQSLCRFNFVYM*NTVERWTKE 222
LVA Y+ +G+ I+ + L+ + C+F++V T+ +W ++
Sbjct: 264 LVAREYISYYEQEEGHDEILLKFAKLNFNFCQFHYVQELKTLTKWWRD 311
>At5g58540.1 68418.m07330 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 484
Score = 26.2 bits (55), Expect = 9.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 97 LRPVYSSLAPRTEPCPAIAPGTASCAP 17
+ P+ LAP P P ++PGT +P
Sbjct: 114 ITPLPVPLAPAPSPSPPVSPGTTKKSP 140
>At4g17360.1 68417.m02603 formyltetrahydrofolate deformylase,
putative similar to formyltetrahydrofolate deformylase
[strain PCC 6803- Synechocystis sp.] SWISS-PROT:Q55135
Length = 328
Score = 26.2 bits (55), Expect = 9.8
Identities = 9/34 (26%), Positives = 20/34 (58%)
Frame = +1
Query: 208 RWTKEGTRIGVMEYDDGLSMLLVPGWYLFE*PSI 309
+W+ + ++ D +S LL+PG+++F P +
Sbjct: 21 KWSFKSSQFHGESLDSSVSPLLIPGFHVFHCPDV 54
>At3g04580.2 68416.m00487 ethylene receptor, putative (EIN4) similar
to ethylene receptor GB:AAC31123 [Malus domestica],
identical to putative ethylene receptor GB:AAD02485
[Arabidopsis thaliana]; Pfam HMM hit: response regulator
receiver domain, signal C terminal domain
Length = 766
Score = 26.2 bits (55), Expect = 9.8
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 132 LWADHILSIAELMPVQFRVYVKHGGALDEGR 224
+W D + IAE++ Q V + H L+E +
Sbjct: 311 VWTDKEIEIAEVVADQVAVAISHASVLEESQ 341
>At3g04580.1 68416.m00486 ethylene receptor, putative (EIN4) similar
to ethylene receptor GB:AAC31123 [Malus domestica],
identical to putative ethylene receptor GB:AAD02485
[Arabidopsis thaliana]; Pfam HMM hit: response regulator
receiver domain, signal C terminal domain
Length = 766
Score = 26.2 bits (55), Expect = 9.8
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 132 LWADHILSIAELMPVQFRVYVKHGGALDEGR 224
+W D + IAE++ Q V + H L+E +
Sbjct: 311 VWTDKEIEIAEVVADQVAVAISHASVLEESQ 341
>At1g32050.1 68414.m03943 secretory carrier membrane protein (SCAMP)
family protein contains Pfam domain, PF04144: SCAMP
family
Length = 264
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 238 HRSSCLPSSNAPPCFTYTRN*TGISSAIERI 146
H C+ ++ APP F + ++ TG+ +AI+ I
Sbjct: 195 HIGFCIVAAIAPPIFFHGKSLTGVLAAIDVI 225
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,454,343
Number of Sequences: 28952
Number of extensions: 233261
Number of successful extensions: 687
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 702840360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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