Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_M11
         (513 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44340.1 68416.m04764 sec23/sec24 transport family protein co...    31   0.60 
At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transfera...    30   1.1  
At1g79480.1 68414.m09263 hypothetical protein low similarity to ...    29   2.4  
At5g14540.1 68418.m01704 proline-rich family protein contains pr...    28   3.2  
At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family...    27   5.6  
At4g28690.1 68417.m04099 expressed protein                             27   7.4  
At1g15940.1 68414.m01913 expressed protein similar To androgen-i...    27   7.4  
At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) / chlorop...    27   9.8  

>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
           contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
           PF04815: Sec23/Sec24 helical domain and PF04810:
           Sec23/Sec24 zinc finger
          Length = 1096

 Score = 30.7 bits (66), Expect = 0.60
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +3

Query: 177 VIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDNPLARGG 326
           ++A P P+   P+ GP     P+S+ PA       N+P   Y  P   GG
Sbjct: 245 MMAPPPPYGQPPNAGPFTGNSPLSSPPAHSIPPPTNFPGVPYGRPPMPGG 294


>At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 456

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 7   SDTIRQ*KLSCFSSSPYWPWLPQTECTWSIITLII-IQA 120
           S  I + + SC  SSP+ PW+P    + +I   I+ IQA
Sbjct: 96  SKIIEEKRYSCIISSPFTPWVPAVAASHNISCAILWIQA 134


>At1g79480.1 68414.m09263 hypothetical protein low similarity to
           beta-1,3-glucanase-like protein GI:9758115 from
           [Arabidopsis thaliana]
          Length = 356

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 20/71 (28%), Positives = 29/71 (40%)
 Frame = +3

Query: 99  NPDYNPGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNH 278
           NP  +    +  D+S  P+   +  V + NP    S P N P  +  P S        ++
Sbjct: 101 NPPESSSNPNPPDSSSNPNSNPNPPVTVPNPPESSSNP-NPPDSSSNPNSNPNPPESSSN 159

Query: 279 PNYPPKRYDNP 311
           PN PP    NP
Sbjct: 160 PN-PPVTVPNP 169


>At5g14540.1 68418.m01704 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 547

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +3

Query: 189 PDPFFSQPSNGPSG--NYEPISTGPAFVDFNHPNYPPKRYDNPLAR 320
           P P  S P N P    ++ P  + P+   +N P  PP  YD P  R
Sbjct: 357 PYPQQSYPPNPPRQPPSHPPPGSAPSQQYYNAPPTPPSMYDGPGGR 402


>At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family
           protein
          Length = 421

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 210 PSNGPSGNYEPISTGPAFVDFNHP-NYPPKRYDNP 311
           PS+ PS ++ P  TGP+   + HP ++ P   D P
Sbjct: 236 PSSYPSNDHLPPPTGPSDSPYPHPYSHQPYHQDPP 270


>At4g28690.1 68417.m04099 expressed protein 
          Length = 448

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
 Frame = +3

Query: 90  VDHNPDYNPGQVHVVDN--SGVPSDGNSDHVVIANPDPFFSQPSNG---PSGNYEPISTG 254
           V  NP   P  +  + N  SG  +   S  VV +NP     +PSNG   P  + + IS G
Sbjct: 235 VQQNPGSQPHAMQSLPNHKSGSNNGNPSPQVVPSNPYVLTRRPSNGVYPPENSVQNISQG 294


>At1g15940.1 68414.m01913 expressed protein similar To
           androgen-induced prostate proliferative shutoff
           associated protein (GI:4559410) [Homo sapiens]
          Length = 990

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 17/68 (25%), Positives = 25/68 (36%)
 Frame = +3

Query: 93  DHNPDYNPGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDF 272
           D  PD       + +N  V +  + +    A  +P     +NG   N EP + G      
Sbjct: 769 DAEPDRMEDHQELPENHNVETKTDGEEQEAAK-EPTAESKTNGEEPNAEPETDGKEHKSL 827

Query: 273 NHPNYPPK 296
             PN  PK
Sbjct: 828 KEPNAEPK 835


>At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) /
           chlorophyll b synthase identical to chlorophyll a
           oxygenase GI:5853117 from [Arabidopsis thaliana];
           contains Pfam PF00355 Rieske [2Fe-2S] domain
          Length = 511

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -2

Query: 371 FLLVLKSLIFMRHLLPTTGERVVVSLGWIIGMIEIDERRSSAYGFIIS 228
           F  +LK+L FM HL     E+V V   WI  +    +    +Y F IS
Sbjct: 462 FAPILKNLPFMEHLWRHFAEQVKVHHKWIDHLQPSSQSCFLSYRFYIS 509


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,269,879
Number of Sequences: 28952
Number of extensions: 208486
Number of successful extensions: 567
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)