Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_M10
         (91 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P62277 Cluster: 40S ribosomal protein S13; n=117; Eukar...    39   0.019
UniRef50_Q7TP70 Cluster: Ab2-079; n=3; Eutheria|Rep: Ab2-079 - R...    38   0.032
UniRef50_P59223 Cluster: 40S ribosomal protein S13-1; n=27; Euka...    33   1.6  
UniRef50_UPI0000E23CD6 Cluster: PREDICTED: similar to Rps13 prot...    31   4.9  

>UniRef50_P62277 Cluster: 40S ribosomal protein S13; n=117;
          Eukaryota|Rep: 40S ribosomal protein S13 - Homo sapiens
          (Human)
          Length = 151

 Score = 39.1 bits (87), Expect = 0.019
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = +3

Query: 39 MGRMHAPGKGISQSALP 89
          MGRMHAPGKG+SQSALP
Sbjct: 1  MGRMHAPGKGLSQSALP 17


>UniRef50_Q7TP70 Cluster: Ab2-079; n=3; Eutheria|Rep: Ab2-079 -
           Rattus norvegicus (Rat)
          Length = 481

 Score = 38.3 bits (85), Expect = 0.032
 Identities = 16/20 (80%), Positives = 19/20 (95%)
 Frame = +3

Query: 30  AANMGRMHAPGKGISQSALP 89
           +A +GRMHAPGKG+SQSALP
Sbjct: 441 SAIVGRMHAPGKGLSQSALP 460


>UniRef50_P59223 Cluster: 40S ribosomal protein S13-1; n=27;
          Eukaryota|Rep: 40S ribosomal protein S13-1 -
          Arabidopsis thaliana (Mouse-ear cress)
          Length = 151

 Score = 32.7 bits (71), Expect = 1.6
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +3

Query: 39 MGRMHAPGKGISQSALP 89
          MGRMH+ GKGIS SALP
Sbjct: 1  MGRMHSRGKGISASALP 17


>UniRef50_UPI0000E23CD6 Cluster: PREDICTED: similar to Rps13
           protein; n=2; Pan troglodytes|Rep: PREDICTED: similar to
           Rps13 protein - Pan troglodytes
          Length = 269

 Score = 31.1 bits (67), Expect = 4.9
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = +3

Query: 30  AANMGRMHAPGKGISQSAL 86
           AA  GR+H PGKG+S+SAL
Sbjct: 211 AAITGRIHVPGKGLSRSAL 229


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,567,233
Number of Sequences: 1657284
Number of extensions: 936788
Number of successful extensions: 3099
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3099
length of database: 575,637,011
effective HSP length: 11
effective length of database: 557,406,887
effective search space used: 10033323966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)