Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_M10
         (91 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0119 - 951492-951679,951780-951918,952023-952095,952196-95...    32   0.055
07_03_0978 + 23099690-23100108,23100530-23100564,23100868-231009...    29   0.39 
05_06_0193 + 26279105-26279229,26279725-26279833,26280362-262804...    26   4.8  
06_03_0533 - 21849923-21850231,21851612-21852121                       25   8.3  

>08_01_0119 -
          951492-951679,951780-951918,952023-952095,952196-952218
          Length = 140

 Score = 32.3 bits (70), Expect = 0.055
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +3

Query: 39 MGRMHAPGKGISQSALP 89
          MGRMH+ GKGIS SA+P
Sbjct: 1  MGRMHSRGKGISSSAIP 17


>07_03_0978 +
          23099690-23100108,23100530-23100564,23100868-23100926,
          23101269-23101310,23102003-23102065,23102172-23102253,
          23102570-23102609,23102657-23102753
          Length = 278

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +3

Query: 39 MGRMHAPGKGISQSALP 89
          MGRMH+ GKG+S S LP
Sbjct: 1  MGRMHSSGKGMSCSVLP 17


>05_06_0193 +
           26279105-26279229,26279725-26279833,26280362-26280437,
           26280527-26281472,26281564-26281615,26281945-26282067,
           26282144-26282219,26282308-26282492,26282615-26282806,
           26282895-26282963,26283745-26283954,26285602-26285751,
           26286283-26286344,26286428-26286503,26286575-26286745
          Length = 873

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +1

Query: 10  FSYYNKKPPIW 42
           F+YYN+KP +W
Sbjct: 827 FNYYNRKPEVW 837


>06_03_0533 - 21849923-21850231,21851612-21852121
          Length = 272

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 81  PTGIYPCQVRAYDPY 37
           P+G YP   RAYD Y
Sbjct: 98  PSGAYPAFARAYDDY 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,905,814
Number of Sequences: 37544
Number of extensions: 25953
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 14,793,348
effective HSP length: 11
effective length of database: 14,380,364
effective search space used: 258846552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)