Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_M10
         (91 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00100.1 68417.m00010 40S ribosomal protein S13 (RPS13A) simi...    33   0.034
At3g60770.1 68416.m06798 40S ribosomal protein S13 (RPS13A) AtRP...    33   0.034
At1g53165.1 68414.m06023 protein kinase, putative similar to ser...    27   1.3  
At5g55770.1 68418.m06951 DC1 domain-containing protein contains ...    25   6.8  
At2g04840.1 68415.m00497 F-box family protein similar to F-box p...    25   6.8  

>At4g00100.1 68417.m00010 40S ribosomal protein S13 (RPS13A)
          similar to ribosomal protein S13;  PF00312 (View Sanger
          Pfam):  ribosomal protein S15; identical to cDNA
          AtRPS13A mRNA for cytoplasmic ribosomal protein S13
          GI:6521011
          Length = 151

 Score = 32.7 bits (71), Expect = 0.034
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +3

Query: 39 MGRMHAPGKGISQSALP 89
          MGRMH+ GKGIS SALP
Sbjct: 1  MGRMHSRGKGISASALP 17


>At3g60770.1 68416.m06798 40S ribosomal protein S13 (RPS13A)
          AtRPS13A mRNA for cytoplasmic ribosomal protein S13,
          Arabidopsis thaliana,AB031739
          Length = 151

 Score = 32.7 bits (71), Expect = 0.034
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +3

Query: 39 MGRMHAPGKGISQSALP 89
          MGRMH+ GKGIS SALP
Sbjct: 1  MGRMHSRGKGISASALP 17


>At1g53165.1 68414.m06023 protein kinase, putative similar to
           serine/threonine protein kinase 24 [Homo sapiens]
           SWISS-PROT:Q9Y6E0
          Length = 1007

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 20  IIKSRQYGSYARTWQGYIPV 79
           I+ ++ YGSY+R WQ   PV
Sbjct: 197 IVTAQLYGSYSRRWQHITPV 216


>At5g55770.1 68418.m06951 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 695

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 88  GSADWDIPLPGACIRPILAAFYYNN 14
           G +  D  LPG C  P++  F YN+
Sbjct: 122 GKSLLDCYLPGICKNPVVPLFRYND 146


>At2g04840.1 68415.m00497 F-box family protein similar to F-box
           protein family, AtFBX7 (GI:20197899) [Arabidopsis
           thaliana]
          Length = 389

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 78  TGIYPCQVRAYDPYWRLFIIITEE 7
           +G YP + +  +PYW+      EE
Sbjct: 229 SGAYPMEKKTENPYWKYLFNAVEE 252


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,227,338
Number of Sequences: 28952
Number of extensions: 19731
Number of successful extensions: 77
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 12,070,560
effective HSP length: 11
effective length of database: 11,752,088
effective search space used: 211537584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)