Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_M09
(552 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces... 26 3.2
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 26 4.2
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.2
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 4.2
SPCC126.13c |||histone deacetylase complex subunit, SAP128 famil... 25 5.6
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 5.6
SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po... 25 7.4
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 25 7.4
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc... 25 7.4
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 25 9.8
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 25 9.8
>SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 134 VLFKNMLPSYTREELDF 184
+L +N LPSYT EEL F
Sbjct: 176 LLIENPLPSYTSEELKF 192
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 25.8 bits (54), Expect = 4.2
Identities = 9/30 (30%), Positives = 21/30 (70%)
Frame = -1
Query: 288 ISAWSR*SAFVISMSYSSIKVTIFSDTTRS 199
+S+ R +F+++ SS+K+T+F D+ ++
Sbjct: 868 LSSDDRIKSFIVAPDDSSVKITLFDDSQKT 897
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 4.2
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = -1
Query: 252 SMSYSSIKVTIFSDTTRSTLTPGKSSSSR 166
S S+SS V+ S T+ STLT SSSSR
Sbjct: 365 SSSFSST-VSSSSSTSSSTLTSSSSSSSR 392
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 390 TQSFVYLLVPNTIAWAAS*ASMTNALTCSKSIASSINSTL 509
TQS Y +T+ W+ S T+ S+ +++ NST+
Sbjct: 3866 TQSVYYNATSSTVPWSNSTFRNTSNTMTSRFVSNDFNSTI 3905
>SPCC126.13c |||histone deacetylase complex subunit, SAP128 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 145
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = +2
Query: 35 DKYTYVPTALDMYTTCLRDPVFW---KIMKR 118
DKY P A D+ T CL +P + K++KR
Sbjct: 93 DKYKDRPIARDLGTVCLHNPKLFQGNKLLKR 123
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 215 EKMVTFMDEYDMDITNALYLDQAEMQKKKSDMVYVARMRRLNHQPFKV 358
EK+ T + ITN+ Y D +M+ + SD++ +H+ +V
Sbjct: 194 EKIETSTSVENAYITNSQYNDTLDMEDQTSDLITTFEHENEDHEVHEV 241
>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 396
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 327 CGVLITSLSRCLSMLCQIRLLTQSFVYLLVPNTIAWAA 440
CG++ SL +RLL + VY IAWA+
Sbjct: 203 CGLIANSLFN--DTFSSLRLLDDNSVYTFSTKNIAWAS 238
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 25.0 bits (52), Expect = 7.4
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -3
Query: 448 AHEAAHAIVFGTNKYTNDCVNSLI*HNIDRHLERL 344
A E +A G NKY N+ V SLI N H L
Sbjct: 1147 ATEIHYAASVGQNKYLNEYVASLIRTNEKTHSTEL 1181
>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 465
Score = 25.0 bits (52), Expect = 7.4
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = -3
Query: 271 VKCIRDIHVIFIHKGDHLFRYNAFNFDTREIKFLASITRQHVFEKHERVHD 119
VK D + +F+ ++LF N ++ + F + R H F+K V D
Sbjct: 139 VKYWSDFNRLFLDT-EYLFPVNCSELNSSDFSFQLGVERFHDFDKQFNVWD 188
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 24.6 bits (51), Expect = 9.8
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = -3
Query: 226 DHLFRYNAFNFDTREIKFLASITRQHVFEKHERVHDAFHYLPE 98
D L YN NFD + A R H F R+H+ F E
Sbjct: 375 DVLIGYNICNFDIPYLLDRAKSLRIHNFPLLGRIHNFFSVAKE 417
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 223 HLFRY-NAFNFDTREIKFLASITRQHVFEKHERVHDAFHYLPEYWIS 86
HL ++ ++F FD +++ L S + + + H + YW+S
Sbjct: 299 HLLQFCSSFEFDHEQLEKLESFGASSLLIELSQEHRLDEFFVSYWVS 345
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,165,502
Number of Sequences: 5004
Number of extensions: 42546
Number of successful extensions: 165
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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