Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_M09
(552 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0645 + 4890647-4890682,4891684-4891929,4892021-4892317,489... 31 0.61
02_01_0106 - 780984-781279,781355-781578,781684-781920,782023-78... 29 1.9
05_01_0355 - 2774217-2774318,2774608-2774775,2774872-2775090,277... 29 3.3
03_06_0109 - 31717691-31718311,31719110-31719223,31719316-317196... 28 5.7
07_01_0184 - 1304328-1304951,1305328-1305441,1305549-1305839,130... 27 7.5
05_04_0032 + 17363039-17363436,17363626-17363936,17364058-173641... 27 7.5
01_06_1113 + 34613668-34614075,34614781-34614970,34615264-346153... 27 7.5
10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396 27 10.0
08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135 27 10.0
03_05_0165 + 21435948-21436144,21436234-21436318,21436690-214367... 27 10.0
02_05_0313 - 27795152-27795268,27795476-27795515,27795773-277958... 27 10.0
01_05_0645 - 23899579-23904483 27 10.0
>01_01_0645 +
4890647-4890682,4891684-4891929,4892021-4892317,
4892407-4892574,4892674-4892841,4892924-4893004,
4893105-4893171,4893657-4893751,4894027-4894099,
4894177-4894247,4894325-4894374,4895263-4895375,
4895461-4895513
Length = 505
Score = 31.1 bits (67), Expect = 0.61
Identities = 13/43 (30%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = +2
Query: 2 RKMLSYNQYNMDKYTYVPTALDMYTTCLRDPVF--WKIMKRVM 124
R+M+SY+ + TY+P +++ C+R+P F W++ +++M
Sbjct: 155 REMMSYSYAALK--TYMPEMVEVLIDCVRNPAFLDWEVKEQIM 195
>02_01_0106 -
780984-781279,781355-781578,781684-781920,782023-782126
Length = 286
Score = 29.5 bits (63), Expect = 1.9
Identities = 38/161 (23%), Positives = 64/161 (39%), Gaps = 1/161 (0%)
Frame = +2
Query: 32 MDKYTYVPTALDMYTTCLRDPVFWKIMKRVMNSFVLFKNMLPSYTREELDFPGVKVERVV 211
+DK Y+ L + + P W I V NS+ + KN P T + + F + E V
Sbjct: 122 LDKKLYITGGLGLTD---KSPNSWDIYDPVTNSWCVHKN--PMLTPDIVKFVALDGELVT 176
Query: 212 SEKMVTFMDEYDMDITNALYLDQAEMQKKKSDMVYVARMRRLNHQPFKVSIDVMSDKAVD 391
K + + + LY+ + + K M++ + + + +SDK
Sbjct: 177 VHKAAWNRMYFAVVMDGTLYMLEQSLGTKL--MMWQKETKEW------IMLGRLSDKLTR 228
Query: 392 AVVRIF-IGPKYDCMGRLMSINDKRLDMLEIDSFVYKLDTG 511
+ IG K +GR +SI LD + D F+ TG
Sbjct: 229 PPCELVGIGRKIYIIGRGLSIVTIDLDTVRADGFLVSSSTG 269
>05_01_0355 -
2774217-2774318,2774608-2774775,2774872-2775090,
2775176-2775319,2775485-2775767,2775874-2775929,
2776012-2776161,2776254-2776340,2776414-2776449,
2777100-2777162,2777247-2777327,2777407-2777496,
2777690-2777767,2777855-2778058,2778139-2778186,
2778262-2778447,2779879-2779978,2780121-2780260
Length = 744
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 213 LKRWSPLWMNMTWISRMHFTWTRLRCKRRSLI 308
+KRWS + + W+SR F R RRSLI
Sbjct: 98 VKRWSNHKIMVRWLSRFFFYLDRYFISRRSLI 129
>03_06_0109 -
31717691-31718311,31719110-31719223,31719316-31719606,
31719698-31720006,31720098-31720865
Length = 700
Score = 27.9 bits (59), Expect = 5.7
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Frame = +2
Query: 14 SYNQYNMDKYTYVPTALDMYTTCLRDP-----VFWKIMKRVMNSFVLFKNMLPSYT 166
SY Y ++ + + ++ CL D VFWK + F+L K +LP Y+
Sbjct: 464 SYEAYRKQQHRWHSGPMQLFRLCLPDIIKCKIVFWKKANLIFLFFLLRKLILPFYS 519
>07_01_0184 -
1304328-1304951,1305328-1305441,1305549-1305839,
1305930-1306238,1306326-1307048
Length = 686
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Frame = +2
Query: 14 SYNQYNMDKYTYVPTALDMYTTCLRDPV-----FWKIMKRVMNSFVLFKNMLPSYT 166
SY Y ++ + + ++ CL D + FWK + F+L K +LP Y+
Sbjct: 449 SYEAYRKQQHRWHSGPMQLFRLCLPDIIRCKIAFWKKANLIFLFFLLRKLILPFYS 504
>05_04_0032 +
17363039-17363436,17363626-17363936,17364058-17364120,
17364697-17365181,17365772-17366122
Length = 535
Score = 27.5 bits (58), Expect = 7.5
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Frame = +2
Query: 290 QKKKSDMVYVARMRRLNHQPFKVSIDVMSDKAVD---AVVRIFIGPKYDCMGRLMSINDK 460
QK ++ M + R +HQ K ++ +D AVV G DC+ M ND
Sbjct: 325 QKIQNQMTCCKKDGRRSHQKTKCMHTLLQKDDLDRSLAVVPPVFGRSTDCVLECMKKNDA 384
Query: 461 RLDMLEID--SFVYKLDTGKNNIVRSS 535
+ D ++ D ++ GK+N + ++
Sbjct: 385 QEDAVQSDLNGITIEMFCGKDNFLTNA 411
>01_06_1113 +
34613668-34614075,34614781-34614970,34615264-34615372,
34615822-34615912,34615948-34616076,34616306-34616804,
34617154-34617251
Length = 507
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 131 FVLFKNMLPSYTREELDFPGVKVERVVSEKMVTFMDEYDM 250
F++ N Y + L+FP VKV ++ E + D D+
Sbjct: 420 FMVLNNFFSDYPDKPLEFPSVKVNQIELESNIAEEDLDDL 459
>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
Length = 1357
Score = 27.1 bits (57), Expect = 10.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 113 KRVMNSFVLFKNMLPSYTREELDFPG 190
++V+N+ L N PSY + +D PG
Sbjct: 795 EQVVNTIYLHDNSFPSYLPKSMDLPG 820
>08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135
Length = 1275
Score = 27.1 bits (57), Expect = 10.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 113 KRVMNSFVLFKNMLPSYTREELDFPG 190
++V+N+ L N PSY + +D PG
Sbjct: 1152 EQVVNTIYLHDNSFPSYLPKSMDLPG 1177
>03_05_0165 +
21435948-21436144,21436234-21436318,21436690-21436768,
21436892-21437005,21437249-21437361,21437570-21437677,
21437760-21437879
Length = 271
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +3
Query: 465 LTCSKSIASSINSTLVRTTSSAARSRCTA 551
+TC +S +SS ++ +VRT ++AA + TA
Sbjct: 30 ITCHRSSSSSSSARVVRTGAAAAPAAATA 58
>02_05_0313 -
27795152-27795268,27795476-27795515,27795773-27795873,
27796862-27796921,27797185-27797294,27797911-27798033,
27798148-27798271,27798585-27798642,27798713-27798841,
27799602-27799762
Length = 340
Score = 27.1 bits (57), Expect = 10.0
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +2
Query: 5 KMLSYNQYNMDKYTYVPTALDMYTTCLRDPVFWKIMKRVMNSFVLFKNMLPSYTRE 172
K L Q N + Y +PT Y + + VFW+ K V FK + S+ R+
Sbjct: 47 KFLEALQLNHNYYEMLPTYWSPYLHMIANNVFWR-TKNTAFVAVEFKYLYKSFDRD 101
>01_05_0645 - 23899579-23904483
Length = 1634
Score = 27.1 bits (57), Expect = 10.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 113 KRVMNSFVLFKNMLPSYTREELDFPG 190
++V+N+ L N PSY + +D PG
Sbjct: 1072 EQVVNTIYLHDNSFPSYLPKSMDLPG 1097
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,566,863
Number of Sequences: 37544
Number of extensions: 254719
Number of successful extensions: 726
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -