Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_M09
         (552 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19610.1 68418.m02334 sec7 domain-containing protein similar ...    29   1.6  
At1g09090.2 68414.m01015 respiratory burst oxidase protein B (Rb...    29   1.6  
At1g09090.1 68414.m01014 respiratory burst oxidase protein B (Rb...    29   1.6  
At4g39210.1 68417.m05551 glucose-1-phosphate adenylyltransferase...    29   2.7  
At3g58790.1 68416.m06552 glycosyl transferase family 8 protein c...    29   2.7  
At5g43190.1 68418.m05276 F-box family protein (FBX6) contains si...    28   3.6  
At1g27680.1 68414.m03383 glucose-1-phosphate adenylyltransferase...    28   3.6  
At5g10710.2 68418.m01241 expressed protein                             28   4.8  
At5g10710.1 68418.m01240 expressed protein                             28   4.8  
At2g21590.1 68415.m02568 glucose-1-phosphate adenylyltransferase...    28   4.8  
At2g16950.1 68415.m01953 importin beta-2 subunit family protein ...    28   4.8  
At1g50940.1 68414.m05727 electron transfer flavoprotein alpha su...    28   4.8  
At4g29200.1 68417.m04177 hypothetical protein                          27   6.3  
At2g34210.1 68415.m04186 KOW domain-containing transcription fac...    27   6.3  
At1g50730.1 68414.m05705 expressed protein                             27   6.3  
At4g31680.1 68417.m04498 transcriptional factor B3 family protei...    27   8.3  

>At5g19610.1 68418.m02334 sec7 domain-containing protein similar to
           SP|Q42510 Pattern formation protein EMB30 (GNOM)
           {Arabidopsis thaliana}; contains Pfam profile PF01369:
           Sec7 domain
          Length = 1375

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
 Frame = -3

Query: 256 DIHVIFIHKGDHLFRYNAFNFDTREIKFLASITRQHVFEKHERVHDAFHYLPEYWIS*AS 77
           ++H+  +    H F +   N DT    FL S       +K ER+ +AF    E +    S
Sbjct: 554 ELHLSVLRSFTHTFEFTGMNLDTALRTFLESFRLPGESQKIERMIEAF---SERFYDQQS 610

Query: 76  SVHIESSGNVRVLVH--IILIVTQH 8
           S    S   V +L +  I+L   QH
Sbjct: 611 SDIFASKDTVHILCYSLIMLNTDQH 635


>At1g09090.2 68414.m01015 respiratory burst oxidase protein B
           (RbohB) / NADPH oxidase identical to respiratory burst
           oxidase protein B from Arabidopsis thaliana [gi:3242783]
          Length = 843

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = +3

Query: 198 LNALYLKRWSPLWMNMTWIS--RMHFTWTRLRCKRRSLIWSTLRVCGVLITSLSRCLSML 371
           ++  +L+ W  +W+   WIS     FTW  L+ KR++ ++  +  C  +    +  L   
Sbjct: 287 ISYFFLENWKRIWVLTLWISICITLFTWKFLQYKRKT-VFEVMGYCVTVAKGSAETLKFN 345

Query: 372 CQIRLLTQSFVYLLVPNTIAW 434
             + LL       +  NTI W
Sbjct: 346 MALILLP------VCRNTITW 360


>At1g09090.1 68414.m01014 respiratory burst oxidase protein B
           (RbohB) / NADPH oxidase identical to respiratory burst
           oxidase protein B from Arabidopsis thaliana [gi:3242783]
          Length = 622

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = +3

Query: 198 LNALYLKRWSPLWMNMTWIS--RMHFTWTRLRCKRRSLIWSTLRVCGVLITSLSRCLSML 371
           ++  +L+ W  +W+   WIS     FTW  L+ KR++ ++  +  C  +    +  L   
Sbjct: 287 ISYFFLENWKRIWVLTLWISICITLFTWKFLQYKRKT-VFEVMGYCVTVAKGSAETLKFN 345

Query: 372 CQIRLLTQSFVYLLVPNTIAW 434
             + LL       +  NTI W
Sbjct: 346 MALILLP------VCRNTITW 360


>At4g39210.1 68417.m05551 glucose-1-phosphate adenylyltransferase
           large subunit 3 (APL3) / ADP-glucose pyrophosphorylase
           identical to SP|P55231
          Length = 521

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 259 RDIHVIFIHKGDHLFRYNAFNFDTREIKFLASIT 158
           R+I  I I  GDHL+R N  +F    +   A IT
Sbjct: 206 RNIENIIILSGDHLYRMNYMDFVQHHVDSKADIT 239


>At3g58790.1 68416.m06552 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8; general stress protein gspA, Bacillus
           subtilis, PIR:S16423
          Length = 540

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 17/62 (27%), Positives = 32/62 (51%)
 Frame = -3

Query: 187 REIKFLASITRQHVFEKHERVHDAFHYLPEYWIS*ASSVHIESSGNVRVLVHIILIVTQH 8
           R+I+  AS+T++ + +   +V  A H+   YW       H+ S G  + L  + L +T+ 
Sbjct: 138 RDIRAFASVTKKMLLQMERKVQSAKHHELVYW-------HLASHGIPKSLHCLSLRLTEE 190

Query: 7   FS 2
           +S
Sbjct: 191 YS 192


>At5g43190.1 68418.m05276 F-box family protein (FBX6) contains
           similarity to unusual floral organs (UFO) GI:4376159
           from [Arabidopsis thaliana]
          Length = 403

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 408 LLVPNTIAWAAS*ASMTNALTCSKSIASSINSTLVRTTSSAARS 539
           L  PN I+W       + +LTC+ S+ SS N  L  + S ++ S
Sbjct: 112 LFNPNLISWCTLPLPRSLSLTCASSLLSSSNGLLCFSLSPSSVS 155


>At1g27680.1 68414.m03383 glucose-1-phosphate adenylyltransferase
           large subunit 2 (APL2) / ADP-glucose pyrophosphorylase
           identical to SP|P55230
          Length = 518

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 259 RDIHVIFIHKGDHLFRYNAFNFDTREIKFLASIT 158
           +++  + I  GDHL+R +  NF  + I+  A IT
Sbjct: 203 KNVEHVLILSGDHLYRMDYMNFVQKHIESNADIT 236


>At5g10710.2 68418.m01241 expressed protein
          Length = 312

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = -3

Query: 517 VLTSVEFIDEAIDFEHVKAFVIDAHEAAHAIVFGTNKYTNDCVNSLI*HNIDRHLERLVI 338
           VL S  F+++ I  EH   F +   +  + ++F   K   D V  L+   +DR  +  +I
Sbjct: 142 VLESKSFLEKMIVLEHTIPFFLPLSDLENDLLFSNAKKFIDNVGDLLQAYVDRKEQVRLI 201

Query: 337 K 335
           K
Sbjct: 202 K 202


>At5g10710.1 68418.m01240 expressed protein
          Length = 312

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = -3

Query: 517 VLTSVEFIDEAIDFEHVKAFVIDAHEAAHAIVFGTNKYTNDCVNSLI*HNIDRHLERLVI 338
           VL S  F+++ I  EH   F +   +  + ++F   K   D V  L+   +DR  +  +I
Sbjct: 142 VLESKSFLEKMIVLEHTIPFFLPLSDLENDLLFSNAKKFIDNVGDLLQAYVDRKEQVRLI 201

Query: 337 K 335
           K
Sbjct: 202 K 202


>At2g21590.1 68415.m02568 glucose-1-phosphate adenylyltransferase
           large subunit, putative / ADP-glucose pyrophosphorylase,
           putative strong similarity to SP|P55231
          Length = 523

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 259 RDIHVIFIHKGDHLFRYNAFNFDTREIKFLASIT 158
           R+I  I I  GDHL+R N  +F    +   A IT
Sbjct: 208 RNIENILILSGDHLYRMNYMDFVQSHVDSNADIT 241


>At2g16950.1 68415.m01953 importin beta-2 subunit family protein
           similar to SP|Q92973 Importin beta-2 subunit
           (Transportin) {Homo sapiens}; contains Pfam profile
           PF03810: Importin-beta N-terminal domain
          Length = 891

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 408 NIRTTASTALSDITSIDTLKGW 343
           NIRTT  T +S I +I+ + GW
Sbjct: 109 NIRTTVGTIISVIVNIEGVSGW 130


>At1g50940.1 68414.m05727 electron transfer flavoprotein alpha
           subunit family protein contains Pfam profile: PF00766
           electron transfer flavoprotein, alpha subunit
          Length = 363

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 24/85 (28%), Positives = 40/85 (47%)
 Frame = +3

Query: 279 RLRCKRRSLIWSTLRVCGVLITSLSRCLSMLCQIRLLTQSFVYLLVPNTIAWAAS*ASMT 458
           R   K + +  +  R   + ITSLSRC+S L    +L +     + P T++   +  S+ 
Sbjct: 8   RALTKNKFVASNAPRSISISITSLSRCISTL----ILAEHESGTIKPQTVSTVVAANSLG 63

Query: 459 NALTCSKSIASSINSTLVRTTSSAA 533
            + + S  +A S  S+L    S AA
Sbjct: 64  ESSSISLLLAGS-GSSLQEAASQAA 87


>At4g29200.1 68417.m04177 hypothetical protein
          Length = 457

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 16/60 (26%), Positives = 31/60 (51%)
 Frame = +3

Query: 306 IWSTLRVCGVLITSLSRCLSMLCQIRLLTQSFVYLLVPNTIAWAAS*ASMTNALTCSKSI 485
           I+  L  C VL   L  CL  L + + +   F+++++ NT+   A      N+++C+ S+
Sbjct: 399 IYCDLTCCTVL---LCLCLKALMEFKSMHFIFLFMVLGNTVCCNALIFEFLNSISCNCSM 455


>At2g34210.1 68415.m04186 KOW domain-containing transcription factor
           family protein
          Length = 990

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 18/54 (33%), Positives = 30/54 (55%)
 Frame = +2

Query: 377 DKAVDAVVRIFIGPKYDCMGRLMSINDKRLDMLEIDSFVYKLDTGKNNIVRSSL 538
           D  V   V+I +GP     GRL+ + DK L  +E+++   K+ TGK +  R ++
Sbjct: 683 DHLVGTYVKIRLGPFKGYSGRLVEVKDK-LVRVELEA---KIVTGKLHFERKAI 732


>At1g50730.1 68414.m05705 expressed protein
          Length = 1013

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 18/80 (22%), Positives = 37/80 (46%)
 Frame = +3

Query: 297  RSLIWSTLRVCGVLITSLSRCLSMLCQIRLLTQSFVYLLVPNTIAWAAS*ASMTNALTCS 476
            RS  W+TLRV   +  ++   LS L Q  L   S    ++ N + +    +     ++C+
Sbjct: 788  RSSSWATLRVKVKIFCAIMSLLSTLSQDNLPYHSANPEIIGNELLFFGDSSYKQELVSCT 847

Query: 477  KSIASSINSTLVRTTSSAAR 536
            + + S +   + + +S  +R
Sbjct: 848  QLVLSELLDAIEQESSQISR 867


>At4g31680.1 68417.m04498 transcriptional factor B3 family protein
           low similarity to reproductive meristem gene 1 [Brassica
           oleracea var. botrytis] GI:3170424; contains Pfam
           profile PF02362: B3 DNA binding domain
          Length = 462

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -3

Query: 262 IRDIHVIFIHKGDHLFRYNAFNFDTREIKFLASITRQHVFEKHE 131
           IRD  V+F H+GD +F   A      EI++  SI+ +   E  E
Sbjct: 81  IRDF-VVFRHEGDMVFHVTALGPSCCEIQYPQSISHEEGEESGE 123


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,074,581
Number of Sequences: 28952
Number of extensions: 211979
Number of successful extensions: 632
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)