Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_M08
         (414 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    26   2.0  
SPCC191.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   2.7  
SPCC4B3.01 ||SPCP25A2.01c|thiosulfate sulfurtransferase|Schizosa...    25   4.7  
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual    24   8.1  
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun...    24   8.1  

>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 42  IVNNNLSGKDLEEFNRIYYGR 104
           ++ N L  K+LE+ NRI YG+
Sbjct: 747 VLQNTLVAKNLEQANRIAYGK 767


>SPCC191.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 149

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +3

Query: 63  GKDLEEFNRIYYG-RKDHFEIKLKDTS 140
           GKD  E  RIY   RK+ F+I LK  S
Sbjct: 116 GKDFTEMTRIYLSIRKNFFQICLKTHS 142


>SPCC4B3.01 ||SPCP25A2.01c|thiosulfate
           sulfurtransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 298

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 276 INEQKKAIFDKVKKIIDVAGQEGVHII 356
           +N+   A FD + K+I+     GVHI+
Sbjct: 157 LNKDLVASFDDIVKVIESPDAAGVHIV 183


>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 533

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 10/43 (23%), Positives = 19/43 (44%)
 Frame = +3

Query: 189 PAKKEQTRPPRIVKVGIIQHSIAIPTDRPINEQKKAIFDKVKK 317
           P       PP+ +KVGI++    +    P+    +   D++ K
Sbjct: 301 PMPWRSVAPPKTLKVGIMRSDNVVNPQPPVARAMQMAIDQLSK 343


>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
           Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 251

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 240 IQHSIAIPTDRPINEQKKAIFDKVKKIIDVAGQE 341
           I   I IPT  P+  Q+K +    + I D  G E
Sbjct: 152 IDTGITIPTQAPLVPQRKNLRQHFRPIGDAVGPE 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,786,013
Number of Sequences: 5004
Number of extensions: 34515
Number of successful extensions: 83
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)