Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_M08
         (414 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42548| Best HMM Match : DNA_binding_1 (HMM E-Value=5.2)             50   8e-07
SB_34841| Best HMM Match : ResIII (HMM E-Value=1.6)                    28   2.6  
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)                   28   3.5  
SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)            28   3.5  
SB_31933| Best HMM Match : PAN (HMM E-Value=3.5e-08)                   27   8.1  
SB_24441| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  
SB_51556| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  
SB_22295| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  

>SB_42548| Best HMM Match : DNA_binding_1 (HMM E-Value=5.2)
          Length = 101

 Score = 50.0 bits (114), Expect = 8e-07
 Identities = 28/92 (30%), Positives = 43/92 (46%)
 Frame = +3

Query: 12  MDHETQSLEAIVNNNLSGKDLEEFNRIYYGRKDHFEIKLKDTSXXXXXXXXXXXXXXXFP 191
           M  E +SL   +  NL  +DL+E  RI YG     ++ L   +                 
Sbjct: 1   MAAEFESLNKTLEKNLPAEDLKEVKRILYGNPVS-DLSLPAAAVSVAAELDFELAGYKID 59

Query: 192 AKKEQTRPPRIVKVGIIQHSIAIPTDRPINEQ 287
           A  E+ R PR+V++G +Q+ I  PT+ PI +Q
Sbjct: 60  AAAEELRQPRLVRIGAVQNKIVEPTNMPIAKQ 91


>SB_34841| Best HMM Match : ResIII (HMM E-Value=1.6)
          Length = 949

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 192 AKKEQTRPPRIVKVGIIQHSIAIPTDRPINEQKKA-IFDKVKKIIDV 329
           A   +  P   VK     H + IPT++PI E + + ++ K+ ++ +V
Sbjct: 762 AHDHRNNPSLAVKAQTYHHYLCIPTEKPIEEWRPSELWHKLDRLAEV 808


>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
          Length = 1819

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = -2

Query: 335 TGDIDYLFYLIENCFFLLVNWTVGWYRDRVLNNTNFNDPRRAGLLLFSRESVRGNLKIS 159
           T +  Y+FY I N   ++V+W  G   +++ N TN+  P   G+ +    +  GN  IS
Sbjct: 556 TNEAVYMFYSIVNGTNVIVDWDFG-DTNKLTNVTNWAFP-SPGVTVIHTYTAPGNYSIS 612


>SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)
          Length = 1197

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = +2

Query: 218 EDR*SWYYSTLDRDTNRPSN*RAEKSNFR*GKKDNRCRRSRGSSYN 355
           +DR   Y    + D  RPS+ R+E+S  R G+ D    RS  SSY+
Sbjct: 151 KDRRENYDDNYEAD-RRPSDRRSERSRSRRGEWDETPSRSSRSSYS 195


>SB_31933| Best HMM Match : PAN (HMM E-Value=3.5e-08)
          Length = 231

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +3

Query: 225 VKVGIIQHSIAIPTDRPINEQKKAIFDKVKKIIDVAGQEGVHIICFQELW 374
           VK+G ++HS +        EQK  I+D+ K+   +     V II +Q LW
Sbjct: 173 VKLGFLRHSGSKSVTMSFEEQKAFIYDRTKRHSIIPST--VQIILWQ-LW 219


>SB_24441| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 608

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 252 IAIPTDRPINEQKKAIFDKVKKIIDVAGQEGVHIICFQELWNMP 383
           IAIPT    N   ++I  ++ ++  V    GV I C  E W  P
Sbjct: 107 IAIPTLLVCNA--RSISSRIDELDGVVAHNGVDIACITESWLTP 148


>SB_51556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 267 DRPINEQKKAIFDKVKKIIDVAG 335
           D+P+ EQKK + + V K+   AG
Sbjct: 93  DKPLEEQKKYLIEAVNKMAKAAG 115


>SB_22295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +3

Query: 285 QKKAIFDKVKKIIDVAGQEGVHIICFQELWNMP 383
           + +A+++ +KK+ D+A +  +HI     L N+P
Sbjct: 354 KSRALYEALKKLFDIALRRNLHITFSYVLSNVP 386


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,125,746
Number of Sequences: 59808
Number of extensions: 253920
Number of successful extensions: 515
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)