Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_M07
         (341 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47115| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.32 
SB_53873| Best HMM Match : Fibrinogen_C (HMM E-Value=0)                27   3.0  
SB_32510| Best HMM Match : LRR_1 (HMM E-Value=0.0053)                  27   4.0  
SB_289| Best HMM Match : Pkinase_Tyr (HMM E-Value=2.5e-32)             27   4.0  
SB_48147| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.0  

>SB_47115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 830

 Score = 30.7 bits (66), Expect = 0.32
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 26  RTLIFFV-FFFYCFTNQRLWYIKKYVYILKMYV*NPIIISLV 148
           R ++FF+ FF  CF     +Y K      K+Y+  PI++S V
Sbjct: 290 RPIMFFLKFFLLCFFGASTYYTKTTTKAEKLYLSIPIVLSFV 331


>SB_53873| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
          Length = 660

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 244 IQWSLVN-SNPVNTNTTIAVCSRGRWFLNSETRHETNYN 131
           +QW+ ++  N +NT    AV S G W+  S   H++N N
Sbjct: 582 MQWTTLDRDNDLNTKANCAVTSIGAWWYKS--CHDSNLN 618


>SB_32510| Best HMM Match : LRR_1 (HMM E-Value=0.0053)
          Length = 377

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +3

Query: 168 NHLPREHTAIVVFVLTGFELTRLHCIIHKIQNKVLENLLFIFNS 299
           N L R  T + V +L G +LT+L  ++H+++     + L +FN+
Sbjct: 181 NGLLRHLTCLEVLMLNGNQLTKLTDVVHELRAMQRLHDLNLFNN 224


>SB_289| Best HMM Match : Pkinase_Tyr (HMM E-Value=2.5e-32)
          Length = 773

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 244 IQWSLVNSNPVNTNTTIAVC-SRGRWFLNSETR 149
           ++ + V+ N VNT    AVC S G W L+ + +
Sbjct: 215 VEGTCVSENSVNTTALTAVCTSDGNWNLSGDVK 247


>SB_48147| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 181

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 195 IVVFVLTGFELTRLHCIIHKIQNKVLENLLFIFNSIFF 308
           IVV+++      R+HC    I   +L  ++ I+ SIFF
Sbjct: 37  IVVYLIDIIRKFRIHCFHSNILPFLLSVIVKIYTSIFF 74


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,978,675
Number of Sequences: 59808
Number of extensions: 133719
Number of successful extensions: 187
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 498218920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)