Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_M07
         (341 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g14700.1 68414.m01757 purple acid phosphatase, putative conta...    31   0.27 
At2g42800.1 68415.m05299 leucine-rich repeat family protein cont...    27   4.3  
At4g24040.1 68417.m03454 glycosyl hydrolase family protein 37 / ...    26   7.6  
At5g49660.1 68418.m06147 leucine-rich repeat transmembrane prote...    25   10.0 

>At1g14700.1 68414.m01757 purple acid phosphatase, putative contains
           Pfam profile: PF00149 calcineurin-like phosphoesterase;
           similar to purple acid phosphatase (GI:20257479)
           [Arabidopsis thaliana]
          Length = 366

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +2

Query: 29  TLIFFVFFFYCFTNQRLWYIKKYVYILKMYV*NPIII 139
           T+ F +FF +CF+N  +  +K     L  YV N III
Sbjct: 15  TIPFLIFFLFCFSNLSMATLKHKPVNLVFYVYNLIII 51


>At2g42800.1 68415.m05299 leucine-rich repeat family protein
           contains leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611;  and grail
          Length = 462

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 14/21 (66%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = +2

Query: 14  PSSIRTLIFF--VFFFYCFTN 70
           PSSI TL F   VFFF CFT+
Sbjct: 105 PSSIFTLPFLQSVFFFNCFTH 125


>At4g24040.1 68417.m03454 glycosyl hydrolase family protein 37 /
          trehalase, putative similar to trehalase 1 GMTRE1
          GI:4559292 from [Glycine max]
          Length = 626

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 26 RTLIFFVFFFYCFT 67
          R+L FF FFF CF+
Sbjct: 44 RSLFFFFFFFLCFS 57


>At5g49660.1 68418.m06147 leucine-rich repeat transmembrane
          protein kinase, putative contains leucine rich repeat
          (LRR) domains, Pfam:PF00560; contains protein kinase
          domain, Pfam:PF00069
          Length = 966

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 38 FFVFFFYCFTNQRLW 82
          F +FFF+CF + + W
Sbjct: 9  FVLFFFFCFNSNQSW 23


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,598,627
Number of Sequences: 28952
Number of extensions: 92850
Number of successful extensions: 170
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 409426656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)